View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_low_30 (Length: 280)
Name: NF6510_low_30
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 1059142 - 1059391
Alignment:
| Q |
18 |
taaataagttcaatacccctttgctaattgctttctgctattgattcctctcatgcttagtctgataatgctttggagtttggagccagctcacacattt |
117 |
Q |
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| T |
1059142 |
taaataagttcaatacccctttgctaattgctttctgctattgattcctctcatgcttagtctgataatgctttggagtttggagccagctcacacattt |
1059241 |
T |
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| Q |
118 |
tgtaaatggtcaggaaaacatagtatgtaagagtaaaactacttttgtatgtgataaagtcactgtatgccaaaaagaagtttacctgattttacaaaat |
217 |
Q |
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| T |
1059242 |
tgtaaatggtcaggaaaacatagtatgtaagagtaaaactacttttgtatgtgataaagtcactgtatgccaaaaagaagtttacctgattttacaaaat |
1059341 |
T |
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| Q |
218 |
tacaatacgcgttttgtgctaacaagaggattatttccgttgtctcgtct |
267 |
Q |
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| T |
1059342 |
tacaatacgcgttttgtgctaacaagaggattatttccattgtctcgtct |
1059391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 1072076 - 1072179
Alignment:
| Q |
96 |
tttggagccagctcacacattttgtaaatggtcaggaaaacatagtatgtaagagtaaaactacttttg--tatgtgataaagtcactgtatgccaaaaa |
193 |
Q |
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| T |
1072076 |
tttggacccagttcacacattttgtaaattgtcagggaa-catagtatgtaagagtaaaactactgttgtatatgtgattaagtcactgaatgccaacaa |
1072174 |
T |
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| Q |
194 |
gaagt |
198 |
Q |
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| T |
1072175 |
gaagt |
1072179 |
T |
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