View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_low_31 (Length: 277)
Name: NF6510_low_31
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 41519832 - 41520087
Alignment:
| Q |
17 |
attaagatttattccttaaaataatgtattaaacttggtttggcctgcacaaacttgtgttgtcttcttcataaaacacaaggccaatgtgatatattgt |
116 |
Q |
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| T |
41519832 |
attaagatttattccttaaaataatgtattaaacttggtttggcctgcacaaacttgtgttgtcttcttcataaaacacaaggccaatgtgatatattgt |
41519931 |
T |
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| Q |
117 |
ggtgaggagggagtatcatcttcataaaacaaagtgatagtatacagttgaaacacacttcaattctactctaacacccaaaaatacatacactgctcct |
216 |
Q |
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| T |
41519932 |
ggtgaggagggagtatcatcttcataaaacaaagtgatagtatacagttgaaacacacttcaattctactctaacacccaaaaatacatacactgctcct |
41520031 |
T |
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| Q |
217 |
taattttccatcatcgttttgcaagcaaaccttaatgttccacactctgtgctgct |
272 |
Q |
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| T |
41520032 |
taattttccatcatcgttttgcaagcaaaccttaatgttccacactttgtgttgct |
41520087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 108 - 267
Target Start/End: Original strand, 41510226 - 41510386
Alignment:
| Q |
108 |
atatattgtggtgaggagggagtatcatcttcataaaacaaagtgatagtatacagttgaaacacacttcaattctactctaacacccaaaaatacatac |
207 |
Q |
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| T |
41510226 |
atatattgagttgtggaggaagtatcatcttcataaaacaaagtgatattatacaattgaaacacgcttcaattcaactctaacacccaaaagtacatac |
41510325 |
T |
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| Q |
208 |
actgctccttaattttcc-atcatcgttttgcaagcaaaccttaatgttccacactctgtg |
267 |
Q |
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| T |
41510326 |
actactcattaattttccaaccatggttttgcaagcaaacattaatgttccacactttgtg |
41510386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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