View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_low_33 (Length: 270)
Name: NF6510_low_33
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 3600858 - 3600623
Alignment:
| Q |
17 |
tctattacctgaggtcctcaaatacgccttaacaaatctttcacgctcctcaacatctgtcaagagaaccagccacgtgaaaataatcagtcacaggaca |
116 |
Q |
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| T |
3600858 |
tctattacctgaggtcctcaaatacgccttaacaaatctttcacgctcctcaacgtctgtcaagagaaccagccacgtgaaaataatcagtcacaggaca |
3600759 |
T |
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| Q |
117 |
caataaaataatgaatgcttcagaaagccacaggtagcataccaggatatttgctataatcaagaatatgaggcgtttctgtatggtagtttgcagccat |
216 |
Q |
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| T |
3600758 |
caataaaataatgaatgcttcagaaagccacaggtagcataccaggatatttgctataatcaagaatatgaggcgtttctgtatggtagtttgcagccat |
3600659 |
T |
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| Q |
217 |
ctcacagaagtggtttgctatatcatacgctacagg |
252 |
Q |
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| T |
3600658 |
ctcacagaagtggtttgctatatcatacgctacagg |
3600623 |
T |
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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 15545775 - 15545865
Alignment:
| Q |
153 |
gcataccaggatatttgctataatcaagaatatgaggcgtttctgtatggtagtttgcagccatctcacagaagtggtttgctatatcata |
243 |
Q |
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| T |
15545775 |
gcataccgggatatttactatagtcgagaatatgtggagtttcggtatgataatttgcagccatttcagagaagtggtttgctatatcata |
15545865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 15326359 - 15326420
Alignment:
| Q |
153 |
gcataccaggatatttgctataatcaagaatatgaggcgtttctgtatggtagtttgcagcc |
214 |
Q |
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| T |
15326359 |
gcataccgggatatttactatagtcaagaatatgtggagtttcggtatgataatttgcagcc |
15326420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 15506728 - 15506789
Alignment:
| Q |
153 |
gcataccaggatatttgctataatcaagaatatgaggcgtttctgtatggtagtttgcagcc |
214 |
Q |
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| T |
15506728 |
gcataccgggatatttactatagtcaagaatatgtggagtttcggtatgataatttgcagcc |
15506789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 14332159 - 14332255
Alignment:
| Q |
156 |
taccaggatatttgctataatcaagaatatgaggcgtttctgtatggtagtttgcagccatctcacagaagtggtttgctatatcatacgctacagg |
252 |
Q |
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| T |
14332159 |
taccaggatatttactgtagtcaagaacatgaggcgtgtcagtgtggtaatttgcggccatttcacagaaatgatttgcaaggtcatacgcaacagg |
14332255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 14425169 - 14425265
Alignment:
| Q |
156 |
taccaggatatttgctataatcaagaatatgaggcgtttctgtatggtagtttgcagccatctcacagaagtggtttgctatatcatacgctacagg |
252 |
Q |
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| T |
14425169 |
taccaggatatttactgtagtcaagaacatgaggcgtgtcagtgtggtaatttgcggccatttcacagaaatgatttgcaaggtcatacgcaacagg |
14425265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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