View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6510_low_36 (Length: 255)

Name: NF6510_low_36
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6510_low_36
NF6510_low_36
[»] chr6 (9 HSPs)
chr6 (11-241)||(30865700-30865930)
chr6 (153-188)||(31686399-31686434)
chr6 (99-185)||(32386087-32386174)
chr6 (98-148)||(5566157-5566207)
chr6 (41-79)||(12111080-12111118)
chr6 (98-140)||(33500460-33500502)
chr6 (125-185)||(14282661-14282722)
chr6 (43-79)||(103543-103579)
chr6 (98-181)||(28641729-28641813)
[»] chr5 (9 HSPs)
chr5 (98-187)||(13604829-13604919)
chr5 (96-177)||(5531045-5531126)
chr5 (98-192)||(41957431-41957526)
chr5 (123-185)||(12975349-12975411)
chr5 (115-185)||(18543194-18543264)
chr5 (43-79)||(9174929-9174965)
chr5 (43-79)||(11153367-11153403)
chr5 (40-80)||(12334276-12334316)
chr5 (100-187)||(21768179-21768267)
[»] chr8 (5 HSPs)
chr8 (98-185)||(5088854-5088942)
chr8 (98-190)||(26473732-26473825)
chr8 (98-185)||(11569437-11569525)
chr8 (153-185)||(6509339-6509371)
chr8 (153-185)||(25097388-25097420)
[»] chr7 (5 HSPs)
chr7 (102-185)||(9423578-9423662)
chr7 (98-139)||(39566187-39566228)
chr7 (98-139)||(33894676-33894717)
chr7 (153-185)||(514769-514801)
chr7 (98-181)||(33645941-33646024)
[»] chr3 (10 HSPs)
chr3 (98-192)||(1217780-1217875)
chr3 (98-181)||(37273140-37273224)
chr3 (43-79)||(51929854-51929890)
chr3 (98-192)||(39602190-39602285)
chr3 (115-192)||(14598550-14598627)
chr3 (98-139)||(24604997-24605038)
chr3 (43-79)||(584159-584195)
chr3 (153-185)||(24158539-24158571)
chr3 (43-79)||(39980842-39980878)
chr3 (102-138)||(44240147-44240183)
[»] chr1 (8 HSPs)
chr1 (100-185)||(17269252-17269338)
chr1 (108-185)||(27140480-27140558)
chr1 (98-192)||(6279394-6279489)
chr1 (98-141)||(11639396-11639439)
chr1 (97-185)||(25479583-25479672)
chr1 (98-139)||(38170670-38170711)
chr1 (43-79)||(11695975-11696011)
chr1 (115-182)||(35017581-35017649)
[»] scaffold0012 (1 HSPs)
scaffold0012 (115-192)||(38588-38665)
[»] chr4 (4 HSPs)
chr4 (43-79)||(3637299-3637335)
chr4 (98-192)||(2996568-2996663)
chr4 (43-79)||(21953386-21953422)
chr4 (99-147)||(55870323-55870371)
[»] scaffold0508 (1 HSPs)
scaffold0508 (102-136)||(9783-9817)
[»] chr2 (2 HSPs)
chr2 (120-185)||(3070248-3070314)
chr2 (98-148)||(31096341-31096391)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 30865930 - 30865700
Alignment:
Q  11 cagagaataattgacttcataggaacaacttatttggattgacttgtttgagcttatctattagcataaccaccttgtagtttgactgagcttatgaaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30865930 cagagaataattgacttcataggaacaacttatttggattgacttgtttgagcttatctattagcataaccaccttgtagtttgactgagcttatgaaaa 30865831  T
Q  111 cagtttatcacatgtccataagttgtttttaaattattgcagaagctctccaggatagctgatgaaaacagcttaaaacttagtgatcatgttagtgtgg 210  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30865830 cagcttatcacatgtccataagttgtttttaaattattgcagaagctctccaggatagctgatgaaaacagcttaaaacttagtgatcatgttagtgtgg 30865731  T
Q  211 attagaactcttgaagctcatggttaaaact 241  Q
    |||||||||||| ||||||||||||||||||    
T  30865730 attagaactcttaaagctcatggttaaaact 30865700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 31686399 - 31686434
Alignment:
Q  153 aagctctccaggatagctgatgaaaacagcttaaaa 188  Q
    |||||||||||||||||| |||||||||||||||||    
T  31686399 aagctctccaggatagcttatgaaaacagcttaaaa 31686434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 32386087 - 32386174
Alignment:
Q  99 agcttatgaaaacagtttatcacatgtccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacagctta 185  Q
    |||||||| |||||| |||  |||||||||||||||||||| |  ||| || || ||||| ||||||||| || ||||||||||||||    
T  32386087 agcttatggaaacagcttacaacatgtccataagttgttttcagcttactttcataagctttccaggataactaatgaaaacagctta 32386174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 5566157 - 5566207
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttttaaattatt 148  Q
    ||||| |||||||||| |||| |||||||||||||||||||| || |||||    
T  5566157 gagctaatgaaaacagcttattacatgtccataagttgttttcaacttatt 5566207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 12111118 - 12111080
Alignment:
Q  41 tatttggattgacttgtttgagcttatctattagcataa 79  Q
    ||||||||||||||| |||||||||||||| ||||||||    
T  12111118 tatttggattgacttatttgagcttatctactagcataa 12111080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 33500460 - 33500502
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgttttt 140  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||    
T  33500460 gagcttatgaaaacaatttatgacatgtgcataagttgttttt 33500502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 14282722 - 14282661
Alignment:
Q  125 tccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacagctta 185  Q
    |||||||||||||||||| ||| ||||| ||||||| ||  ||||||||| |||||||||||    
T  14282722 tccataagttgtttttaacttatttgcataagctcttcatcatagctgataaaaacagctta 14282661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 103579 - 103543
Alignment:
Q  43 tttggattgacttgtttgagcttatctattagcataa 79  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  103579 tttggattgacttatttgagcttatatattagcataa 103543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 28641729 - 28641813
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacag 181  Q
    |||||||||||||||| |||| |||||| |||||| ||||||||  ||| || || ||||||| ||| ||||||  |||||||||    
T  28641729 gagcttatgaaaacagcttataacatgttcataagctgtttttagcttattttcataagctctgcagaatagctattgaaaacag 28641813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 13604829 - 13604919
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacagcttaaa 187  Q
    |||||||||||||||| |||| ||||||||||| |||||||| || ||| || || ||||||| || |||| || ||||||||||||||||    
T  13604829 gagcttatgaaaacagcttatgacatgtccatacgttgttttcaacttattttcataagctcttcaagataacttatgaaaacagcttaaa 13604919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 5531126 - 5531045
Alignment:
Q  96 ctgagcttatgaaaacagtttatcacatgtccataagttgtttttaaattattgcagaagctctccaggatagctgatgaaa 177  Q
    |||||||||||||||||  |||| | ||||||||||||||||||||  |  || ||||||||||||||||| ||| ||||||    
T  5531126 ctgagcttatgaaaacaacttatgatatgtccataagttgtttttacttatttccagaagctctccaggattgcttatgaaa 5531045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 41957431 - 41957526
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacagcttaaaactta 192  Q
    ||||||| | |||||| |||| |||||||||||||||||||| |  ||| || || ||| |||| ||||||||| |||||||||||||| ||||||    
T  41957431 gagcttacggaaacagcttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttataactta 41957526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 12975411 - 12975349
Alignment:
Q  123 tgtccataagttgtttttaaattattgcagaagctctccaggatagctgatgaaaacagctta 185  Q
    ||||||||||||||||| || ||||| || |||||||||| ||||||| ||||| ||||||||    
T  12975411 tgtccataagttgttttcaacttattccataagctctccaagatagcttatgaacacagctta 12975349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 18543194 - 18543264
Alignment:
Q  115 ttatcacatgtccataagttgtttttaaattattgcagaagctctccaggatagctgatgaaaacagctta 185  Q
    |||| |||||||||| ||||||||| |  ||||| || |||||||||||||||||| ||||||||| ||||    
T  18543194 ttatgacatgtccatgagttgttttcagcttatttcataagctctccaggatagcttatgaaaacaactta 18543264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 9174965 - 9174929
Alignment:
Q  43 tttggattgacttgtttgagcttatctattagcataa 79  Q
    ||||||||||||| |||||||||||||||||||||||    
T  9174965 tttggattgacttatttgagcttatctattagcataa 9174929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 11153367 - 11153403
Alignment:
Q  43 tttggattgacttgtttgagcttatctattagcataa 79  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  11153367 tttggattggcttgtttgagcttatctactagcataa 11153403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 12334276 - 12334316
Alignment:
Q  40 ttatttggattgacttgtttgagcttatctattagcataac 80  Q
    |||||||||||||||| |||||| ||||||| |||||||||    
T  12334276 ttatttggattgacttatttgagtttatctagtagcataac 12334316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 21768179 - 21768267
Alignment:
Q  100 gcttatgaaaacagtttatcacatgtccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacagcttaaa 187  Q
    |||||||||||||| |||| ||||||||||| | |||||| || ||| || |  ||||||| || |||| || ||||||||||||||||    
T  21768179 gcttatgaaaacagcttatgacatgtccatacgctgttttcaacttattttcgtaagctcttcaagataacttatgaaaacagcttaaa 21768267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 185
Target Start/End: Complemental strand, 5088942 - 5088854
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttttaaattattgc-agaagctctccaggatagctgatgaaaacagctta 185  Q
    ||||||||| ||||||||||| ||||||||||||| |||||| || ||||| | | |||||||||||||| |||  |||||||| ||||    
T  5088942 gagcttatggaaacagtttataacatgtccataagctgttttcaacttatttcaataagctctccaggatcgcttgtgaaaacaactta 5088854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 26473732 - 26473825
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacagcttaaaact 190  Q
    |||||||||||||||| |||| ||||||| ||||| |  |||||| ||| || || |||||||| ||||||||| ||||||||| |||| ||||    
T  26473732 gagcttatgaaaacagcttatgacatgtctataagctagttttaacttattttcataagctctctaggatagcttatgaaaacaacttacaact 26473825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 11569437 - 11569525
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacagctta 185  Q
    ||||||||| |||||| |||| |||||| ||||||||||||| |  ||| || || || ||||||| ||||||| ||||||||||||||    
T  11569437 gagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatgaaaacagctta 11569525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 6509339 - 6509371
Alignment:
Q  153 aagctctccaggatagctgatgaaaacagctta 185  Q
    |||||||||||||||||| ||||||||||||||    
T  6509339 aagctctccaggatagcttatgaaaacagctta 6509371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 25097420 - 25097388
Alignment:
Q  153 aagctctccaggatagctgatgaaaacagctta 185  Q
    |||||||||||||||||| ||||||||||||||    
T  25097420 aagctctccaggatagcttatgaaaacagctta 25097388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 9423578 - 9423662
Alignment:
Q  102 ttatgaaaacagtttatcacatgtccataagttgtttttaaattattgca-gaagctctccaggatagctgatgaaaacagctta 185  Q
    ||||| ||||| ||||| |||||| ||||||||||||| |  ||||| || ||||||||||||||||||| || |||||||||||    
T  9423578 ttatggaaacaatttatgacatgttcataagttgttttcagcttatttcaagaagctctccaggatagcttattaaaacagctta 9423662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 39566187 - 39566228
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttt 139  Q
    ||||||||| ||||| ||||||||||||||||||||||||||    
T  39566187 gagcttatggaaacattttatcacatgtccataagttgtttt 39566228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 33894717 - 33894676
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttt 139  Q
    ||||||||||||||||  ||| ||||||||||||||||||||    
T  33894717 gagcttatgaaaacagcatatgacatgtccataagttgtttt 33894676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 514801 - 514769
Alignment:
Q  153 aagctctccaggatagctgatgaaaacagctta 185  Q
    |||||||||||||||||| ||||||||||||||    
T  514801 aagctctccaggatagcttatgaaaacagctta 514769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 33645941 - 33646024
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacag 181  Q
    ||||||||| |||||  |||| ||||||| ||||||||||||||  ||| || || |||||||||| ||||||| ||||||||||    
T  33645941 gagcttatggaaacaacttatgacatgtctataagttgtttttaggttatttccataagctctcca-gatagcttatgaaaacag 33646024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 1217780 - 1217875
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacagcttaaaactta 192  Q
    ||||||| | |||||| |||| |||||||||||||||||||| |  ||| || || ||| |||| ||||||||| |||||||||||||| ||||||    
T  1217780 gagcttacggaaacagcttatgacatgtccataagttgttttcatcttactttcataagttctcaaggatagcttatgaaaacagcttataactta 1217875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 37273224 - 37273140
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacag 181  Q
    ||||||||| |||||  |||| |||||||||||||||||||| || ||| || || ||| |||||| ||||||| ||||||||||    
T  37273224 gagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaacag 37273140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 51929890 - 51929854
Alignment:
Q  43 tttggattgacttgtttgagcttatctattagcataa 79  Q
    ||||||||||||| |||||||||||||||||||||||    
T  51929890 tttggattgacttatttgagcttatctattagcataa 51929854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 39602190 - 39602285
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacagcttaaaactta 192  Q
    ||||||||||| |||| |||| |||||| ||||| ||||||| || ||| || || ||| |||| | ||||||| |||||||||||||| ||||||    
T  39602190 gagcttatgaagacagcttatgacatgttcataaattgttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttataactta 39602285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 14598550 - 14598627
Alignment:
Q  115 ttatcacatgtccataagttgtttttaaattattgcagaagctctccaggatagctgatgaaaacagcttaaaactta 192  Q
    |||| |||||||||||||||||||  || ||||| || |||| |||||| |||| | || ||||||||||| ||||||    
T  14598550 ttatgacatgtccataagttgtttccaacttatttcataagcactccagaataggttataaaaacagcttataactta 14598627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 24604997 - 24605038
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttt 139  Q
    ||||||||| ||||||||||| ||||||||||||| ||||||    
T  24604997 gagcttatgcaaacagtttataacatgtccataagctgtttt 24605038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 584195 - 584159
Alignment:
Q  43 tttggattgacttgtttgagcttatctattagcataa 79  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  584195 tttggattgacttatttgagcttatctactagcataa 584159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 24158539 - 24158571
Alignment:
Q  153 aagctctccaggatagctgatgaaaacagctta 185  Q
    |||||||||||||||||| ||||||||||||||    
T  24158539 aagctctccaggatagcttatgaaaacagctta 24158571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 39980878 - 39980842
Alignment:
Q  43 tttggattgacttgtttgagcttatctattagcataa 79  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  39980878 tttggattggcttgtttgagcttatctactagcataa 39980842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 44240183 - 44240147
Alignment:
Q  102 ttatgaaaacagtttatcacatgtccataagttgttt 138  Q
    |||| |||||||||||||||||||| |||||||||||    
T  44240183 ttataaaaacagtttatcacatgtctataagttgttt 44240147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 17269338 - 17269252
Alignment:
Q  100 gcttatgaaaacagtttatcacatgtccataagttgtttttaaattattgcag-aagctctccaggatagctgatgaaaacagctta 185  Q
    ||||||||||| |  |||| |||||| ||| |||||||||||| ||||| | | |||||||||||||||||| ||||||||| ||||    
T  17269338 gcttatgaaaataccttatgacatgttcatgagttgtttttaacttattaccgtaagctctccaggatagcttatgaaaacaactta 17269252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 27140558 - 27140480
Alignment:
Q  108 aaacagtttatcacatgtccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacagctta 185  Q
    |||||| |||| |||||||||||||||||||| |  ||| ||||| |||||||||| ||||||| || |||||||||||    
T  27140558 aaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagctta 27140480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 6279489 - 6279394
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacagcttaaaactta 192  Q
    ||||||||| |||||||| | ||||||||||||||||||||| |   || || || |||||||| ||||||||| ||||||| || ||||| ||||    
T  6279489 gagcttatggaaacagttaaccacatgtccataagttgttttcagcgtatttccataagctctctaggatagcttatgaaaatagtttaaagctta 6279394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 11639396 - 11639439
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgttttta 141  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||    
T  11639396 gagcttatgaaaacagcttatgacatgtccataagctgttttta 11639439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 25479672 - 25479583
Alignment:
Q  97 tgagcttatgaaaacagtttatcacatgtccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacagctta 185  Q
    |||||||||||||| || |||| |||||| ||| ||||||||| |  ||| || || |||||||| ||||||||| ||||||||| ||||    
T  25479672 tgagcttatgaaaatagattatgacatgttcattagttgttttcagcttattttcataagctctctaggatagcttatgaaaacaactta 25479583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 38170670 - 38170711
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttt 139  Q
    |||||||||||||||| |||| |||||| |||||||||||||    
T  38170670 gagcttatgaaaacagcttatgacatgttcataagttgtttt 38170711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 11696011 - 11695975
Alignment:
Q  43 tttggattgacttgtttgagcttatctattagcataa 79  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  11696011 tttggattgacttatttgagcttatttattagcataa 11695975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 35017649 - 35017581
Alignment:
Q  115 ttatcacatgtccataagttgtttttaaattattgc-agaagctctccaggatagctgatgaaaacagc 182  Q
    |||| ||||||||||||||| |||| || ||||| | | ||||||||||||| |||| |||||||||||    
T  35017649 ttatgacatgtccataagttattttcaacttatttccataagctctccaggacagcttatgaaaacagc 35017581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 38665 - 38588
Alignment:
Q  115 ttatcacatgtccataagttgtttttaaattattgcagaagctctccaggatagctgatgaaaacagcttaaaactta 192  Q
    |||| ||||||||||||||||||| ||| ||||| || |||| |||||| |||| | || ||||||||||| ||||||    
T  38665 ttatgacatgtccataagttgtttctaacttatttcataagcactccagaataggttataaaaacagcttataactta 38588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 3637299 - 3637335
Alignment:
Q  43 tttggattgacttgtttgagcttatctattagcataa 79  Q
    ||||||||||||| |||||||||||||||||||||||    
T  3637299 tttggattgacttatttgagcttatctattagcataa 3637335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 2996663 - 2996568
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttttaaatta-ttgcagaagctctccaggatagctgatgaaaacagcttaaaactta 192  Q
    |||||||||||||||  |||| ||||||||||||| | |||| || ||| || || | |||||||| ||||||| ||||||||| |||| ||||||    
T  2996663 gagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataactta 2996568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 21953422 - 21953386
Alignment:
Q  43 tttggattgacttgtttgagcttatctattagcataa 79  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  21953422 tttggattgacttatttgagcttatctagtagcataa 21953386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 55870323 - 55870371
Alignment:
Q  99 agcttatgaaaacagtttatcacatgtccataagttgtttttaaattat 147  Q
    |||||||||||| ||||||| || |||||||||| |||||| |||||||    
T  55870323 agcttatgaaaaaagtttatgacctgtccataagctgttttaaaattat 55870371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 136
Target Start/End: Original strand, 9783 - 9817
Alignment:
Q  102 ttatgaaaacagtttatcacatgtccataagttgt 136  Q
    ||||||||||||||||| |||||||||||||||||    
T  9783 ttatgaaaacagtttatgacatgtccataagttgt 9817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 3070248 - 3070314
Alignment:
Q  120 acatgtccataagttgtttttaaattattgc-agaagctctccaggatagctgatgaaaacagctta 185  Q
    ||||||| ||||||||||||||  ||||| | |||||||||||| ||| ||| ||||||||||||||    
T  3070248 acatgtcaataagttgtttttatcttatttctagaagctctccaagatggcttatgaaaacagctta 3070314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 31096391 - 31096341
Alignment:
Q  98 gagcttatgaaaacagtttatcacatgtccataagttgtttttaaattatt 148  Q
    |||||||||||||||||| || ||||||||||||| |||||| || |||||    
T  31096391 gagcttatgaaaacagttaataacatgtccataagctgttttaaacttatt 31096341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University