View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_low_38 (Length: 245)
Name: NF6510_low_38
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5832844 - 5833070
Alignment:
| Q |
1 |
aggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagcttgccagtgaattgtggctcaaagaaagcatcagatgaaataccaacagaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5832844 |
aggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagtttgccggtgaattgtggctcaaagaaagcatcagatgaaataccaacagaac |
5832943 |
T |
|
| Q |
101 |
ttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctccactataacttcagatgttctacattgatactcaatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5832944 |
ttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctccactataacttcagatgttctacattgatactcaatttc |
5833043 |
T |
|
| Q |
201 |
accattaacacctttctgagtctccaa |
227 |
Q |
| |
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|||||| |||||||||||||||||||| |
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| T |
5833044 |
accattgacacctttctgagtctccaa |
5833070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 5828911 - 5828706
Alignment:
| Q |
1 |
aggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagcttgccagtgaattgtggctcaaagaaagcatcagatgaaataccaacagaac |
100 |
Q |
| |
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||||||||||| || || ||||| | |||||| ||| || |||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
5828911 |
aggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaac |
5828812 |
T |
|
| Q |
101 |
ttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctccactataacttcagatgttctacattgatactcaatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||| |||| |
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| T |
5828811 |
ttctatcaacaccacatgcttccacacattgatctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttc |
5828712 |
T |
|
| Q |
201 |
accatt |
206 |
Q |
| |
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|||||| |
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|
| T |
5828711 |
accatt |
5828706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 5822966 - 5823171
Alignment:
| Q |
1 |
aggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagcttgccagtgaattgtggctcaaagaaagcatcagatgaaataccaacagaac |
100 |
Q |
| |
|
||||||||||| || || ||||| | |||||| ||| || |||||||||| ||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
5822966 |
aggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaac |
5823065 |
T |
|
| Q |
101 |
ttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctccactataacttcagatgttctacattgatactcaatttc |
200 |
Q |
| |
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|||||||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||| |||| |
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| T |
5823066 |
ttctatcaacaccacatgcttctacacattcgtctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttc |
5823165 |
T |
|
| Q |
201 |
accatt |
206 |
Q |
| |
|
|||||| |
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|
| T |
5823166 |
accatt |
5823171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 24038464 - 24038609
Alignment:
| Q |
1 |
aggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagcttgccagtgaattgtggctcaaagaaagcatcagatgaaataccaacagaac |
100 |
Q |
| |
|
||||||||||| || ||||| |||| |||||||| || ||| ||||| ||| | |||||||||||||||| || ||||| || ||||| || ||| || |
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| T |
24038464 |
aggtcaacaatattggggcaattttggtaacaagatgatgaacaaagtttggctgtgaattgtggctcaagcaatgcatcggaagaaattccgacaaaat |
24038563 |
T |
|
| Q |
101 |
ttctatcaacaccacatgcttccacacattgatctgtctctatgta |
146 |
Q |
| |
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| || ||||| |||||||||| |||||||||||||||||||||||| |
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|
| T |
24038564 |
tcctttcaactccacatgctttcacacattgatctgtctctatgta |
24038609 |
T |
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