View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6510_low_41 (Length: 240)

Name: NF6510_low_41
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6510_low_41
NF6510_low_41
[»] chr8 (9 HSPs)
chr8 (70-168)||(16871397-16871495)
chr8 (70-168)||(458910-459010)
chr8 (9-70)||(16399252-16399313)
chr8 (70-158)||(3759018-3759106)
chr8 (70-135)||(37929302-37929367)
chr8 (70-101)||(7143411-7143442)
chr8 (70-100)||(44222939-44222969)
chr8 (70-135)||(33283014-33283079)
chr8 (70-110)||(4784911-4784951)
[»] chr1 (5 HSPs)
chr1 (70-168)||(33135938-33136036)
chr1 (64-142)||(22582990-22583068)
chr1 (70-164)||(38273919-38274013)
chr1 (70-137)||(25530240-25530307)
chr1 (65-102)||(46732146-46732183)
[»] chr4 (11 HSPs)
chr4 (70-164)||(25197713-25197807)
chr4 (70-167)||(16584590-16584687)
chr4 (70-164)||(297445-297539)
chr4 (70-149)||(39959164-39959242)
chr4 (70-137)||(45680074-45680141)
chr4 (70-135)||(53650275-53650340)
chr4 (70-110)||(5761209-5761249)
chr4 (15-70)||(792719-792774)
chr4 (70-101)||(22653519-22653550)
chr4 (70-110)||(5727346-5727386)
chr4 (70-102)||(10418945-10418977)
[»] chr7 (11 HSPs)
chr7 (9-70)||(22849044-22849105)
chr7 (82-168)||(41216050-41216136)
chr7 (71-137)||(12092872-12092938)
chr7 (70-152)||(13636670-13636752)
chr7 (70-152)||(13697859-13697941)
chr7 (70-135)||(38154100-38154165)
chr7 (70-124)||(14315223-14315277)
chr7 (70-135)||(41529585-41529650)
chr7 (70-137)||(1279300-1279367)
chr7 (70-100)||(23710312-23710342)
chr7 (70-102)||(18299440-18299472)
[»] scaffold0003 (1 HSPs)
scaffold0003 (70-164)||(291162-291256)
[»] chr5 (7 HSPs)
chr5 (74-164)||(28043165-28043254)
chr5 (66-137)||(11721786-11721857)
chr5 (70-164)||(32097887-32097981)
chr5 (70-101)||(22565401-22565432)
chr5 (70-111)||(18968078-18968119)
chr5 (66-102)||(22580379-22580415)
chr5 (70-110)||(37536095-37536135)
[»] chr2 (8 HSPs)
chr2 (70-140)||(37120732-37120802)
chr2 (70-164)||(6512308-6512402)
chr2 (70-164)||(20535064-20535157)
chr2 (71-137)||(21563610-21563676)
chr2 (110-168)||(21936480-21936537)
chr2 (70-128)||(34443876-34443934)
chr2 (70-110)||(27009423-27009463)
chr2 (70-131)||(36176478-36176539)
[»] chr3 (8 HSPs)
chr3 (60-137)||(43797142-43797219)
chr3 (70-168)||(51346056-51346154)
chr3 (70-164)||(17641362-17641456)
chr3 (70-110)||(18690541-18690581)
chr3 (70-133)||(3694550-3694613)
chr3 (70-133)||(31050873-31050936)
chr3 (70-102)||(10436423-10436455)
chr3 (70-110)||(18651116-18651156)
[»] chr6 (6 HSPs)
chr6 (9-70)||(30886860-30886921)
chr6 (70-110)||(34715142-34715182)
chr6 (70-133)||(34017832-34017895)
chr6 (82-134)||(17292607-17292659)
chr6 (70-132)||(11012636-11012698)
chr6 (70-102)||(1840687-1840719)
[»] scaffold0027 (1 HSPs)
scaffold0027 (70-128)||(45332-45390)
[»] scaffold0020 (1 HSPs)
scaffold0020 (65-102)||(124178-124215)


Alignment Details
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 16871397 - 16871495
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatatttac 168  Q
    |||||| ||||| |||||||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||    
T  16871397 ttttttaaagagactaaaatgaaatatattactcaatcaaaaagttcctcctggcacaaggtgtaccagaaaaagaacaatagtcacaaacatatttac 16871495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 458910 - 459010
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatat--tactcaatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatattta 167  Q
    |||||||||||| ||||||||||||||||  ||| |||||||||||||| ||||||||||| | ||||||| ||||||| || ||||| |||||||||||    
T  458910 ttttttgaagagcctaaaatggaatatatattacccaatcaaaaagttcttcctagcacaaggagtaccagaaaaagaaaaagagtcaaaaacatattta 459009  T
Q  168 c 168  Q
    |    
T  459010 c 459010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 16399252 - 16399313
Alignment:
Q  9 aagcaaaggggttttcacataggagtgttaatcacttataaaaattatgtaattgaatttct 70  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  16399252 aagcagaggggttttcacataggagtgtcaatcatttataaaaattatgtaattgaatttct 16399313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 3759106 - 3759018
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactc-aatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaa 158  Q
    |||||| ||||||||||||||||||||||||| | ||||||| ||||| ||||||||||| |||| |||| |||||||||| ||||||||    
T  3759106 tttttttaagaggctaaaatggaatatattacccaaatcaaagagttcttcctagcacaaggtgtgccagaaaaagaacaa-agtcacaa 3759018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 37929367 - 37929302
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtac 135  Q
    ||||||||||||||||||||||||||||||||  | |||||||||   ||||||||||| ||||||    
T  37929367 ttttttgaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 37929302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 101
Target Start/End: Original strand, 7143411 - 7143442
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattac 101  Q
    ||||||||||||||||||||||||||||||||    
T  7143411 ttttttgaagaggctaaaatggaatatattac 7143442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 44222939 - 44222969
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatatta 100  Q
    |||||||||||||||||||||||||||||||    
T  44222939 ttttttgaagaggctaaaatggaatatatta 44222969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 33283079 - 33283014
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtac 135  Q
    ||||||||||||||||||||| |||||||||   ||||||| || || |||||| |||| ||||||    
T  33283079 ttttttgaagaggctaaaatgaaatatattatcaaatcaaagaggtcttcctagtacaaggtgtac 33283014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 4784951 - 4784911
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaa 110  Q
    |||||| |||||||||||||||||||||||||  |||||||    
T  4784951 tttttttaagaggctaaaatggaatatattaccaaatcaaa 4784911  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 33135938 - 33136036
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatatttac 168  Q
    ||||||||||||  ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  33135938 ttttttgaagagattaaaatgaaatatattactcaatcataaagttcctcctagcacaaggtgtaccaggaaaagaacaagagtcacaaacatatttac 33136036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 22582990 - 22583068
Alignment:
Q  64 aatttcttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtaccaggaaa 142  Q
    ||||| |||||| |||||||||||||||||||||||||  |||||||| |||| |||||||||||||||||||| ||||    
T  22582990 aattttttttttaaagaggctaaaatggaatatattacaaaatcaaaatgttcttcctagcacaaagtgtaccaagaaa 22583068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 38273919 - 38274013
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactc-aatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatat 164  Q
    |||||||||||| |||||||| |||||||||| | |||||||| |||| | ||||||||| |||| |||| |||||||||| |||||||| |||||    
T  38273919 ttttttgaagagactaaaatgaaatatattacccaaatcaaaatgttcttgctagcacaaggtgtgccagaaaaagaacaa-agtcacaatcatat 38274013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 25530307 - 25530240
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtacca 137  Q
    ||||||||||||||||||||| ||||||||||  |||||||| | || ||||||||||| ||| ||||    
T  25530307 ttttttgaagaggctaaaatgaaatatattaccaaatcaaaatggtcttcctagcacaaggtgcacca 25530240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 46732183 - 46732146
Alignment:
Q  65 atttcttttttgaagaggctaaaatggaatatattact 102  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  46732183 attttttttttgaagaagctaaaatggaatatattact 46732146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 25197807 - 25197713
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatat 164  Q
    ||||||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  25197807 ttttttgaagaggctaaaatgaaatatattacccaatcaaaatgttcttcctagcacaaggtgtaccaggaaaagaacaaaagtcacaaacatat 25197713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 16584687 - 16584590
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatattta 167  Q
    |||||| || ||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||| |  ||||||||||||||||    
T  16584687 tttttttaataggctaaaatgaaatatattacttaatcaaaaagttcttcctagcacaaggtgtaccaggataagaactaaggtcacaaacatattta 16584590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 297539 - 297445
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaa-tcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatat 164  Q
    |||||| |||| ||||||||| |||||||||  ||| ||||| ||||| | ||||||||| ||||| |||||||||||||| ||||||||||||||    
T  297539 tttttttaagaagctaaaatgaaatatattatccaaatcaaagagttctttctagcacaaggtgtatcaggaaaagaacaa-agtcacaaacatat 297445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 39959242 - 39959164
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaa 149  Q
    |||||| |||||| ||||||| |||||||||||||||||||| || | ||||| ||||| || ||||| |||||||||||    
T  39959242 ttttttaaagaggttaaaatgaaatatattactcaatcaaaatgtccttcctaacacaaggtatacca-gaaaagaacaa 39959164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 45680074 - 45680141
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtacca 137  Q
    ||||||||||| | |||||||||||||||||   |||||||| |||| ||||||||||| ||||||||    
T  45680074 ttttttgaagaagttaaaatggaatatattatcaaatcaaaatgttcttcctagcacaaggtgtacca 45680141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 53650275 - 53650340
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtac 135  Q
    |||||| |||||| |||||||||||||| ||| ||||||||  |||| ||||||||||| ||||||    
T  53650275 tttttttaagaggttaaaatggaatatagtacacaatcaaagcgttcttcctagcacaaggtgtac 53650340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 5761249 - 5761209
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaa 110  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  5761249 tttttttaagaggctaaaatggaatatattactaaatcaaa 5761209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 792774 - 792719
Alignment:
Q  15 aggggttttcacataggagtgttaatcacttataaaaattatgtaattgaatttct 70  Q
    |||| ||||||||| || |||||||||| |||||||| || |||||||||||||||    
T  792774 agggtttttcacatgggggtgttaatcatttataaaagttgtgtaattgaatttct 792719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 101
Target Start/End: Complemental strand, 22653550 - 22653519
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattac 101  Q
    ||||||||||||||||||||||||||||||||    
T  22653550 ttttttgaagaggctaaaatggaatatattac 22653519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 5727386 - 5727346
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaa 110  Q
    |||||| |||||| ||||||||||||||||||| |||||||    
T  5727386 tttttttaagaggttaaaatggaatatattactaaatcaaa 5727346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 10418945 - 10418977
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattact 102  Q
    ||||||||||| |||||||||||||||||||||    
T  10418945 ttttttgaagaagctaaaatggaatatattact 10418977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 22849105 - 22849044
Alignment:
Q  9 aagcaaaggggttttcacataggagtgttaatcacttataaaaattatgtaattgaatttct 70  Q
    |||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  22849105 aagcaaagggattttcacataggagtgttaatcatttataaatattatgtaattgaatttct 22849044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 41216050 - 41216136
Alignment:
Q  82 gctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatatttac 168  Q
    ||||||||| ||||||||| | ||||||||||||| |||||||| || | ||||||||| |||||| | ||||||||||||||||||    
T  41216050 gctaaaatgaaatatattagttaatcaaaaagttcttcctagcataaggcgtaccaggataagaactaaagtcacaaacatatttac 41216136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 12092938 - 12092872
Alignment:
Q  71 tttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtacca 137  Q
    ||||| || ||||||||||||||||||||||  |||||||| |||| ||||||||||| ||||||||    
T  12092938 ttttttaataggctaaaatggaatatattaccaaatcaaaatgttcttcctagcacaaggtgtacca 12092872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 13636670 - 13636752
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatag 152  Q
    |||||| ||||||||||||||  |||||||||  |||||||| |||| |||||| |||| |||||||| |||| |||||||||    
T  13636670 tttttttaagaggctaaaatgagatatattaccaaatcaaaatgttcttcctagtacaaggtgtaccaagaaaggaacaatag 13636752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 13697859 - 13697941
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatag 152  Q
    |||||| ||||||||||||||  |||||||||  |||||||| |||| |||||| |||| |||||||| |||| |||||||||    
T  13697859 tttttttaagaggctaaaatgagatatattaccaaatcaaaatgttcttcctagtacaaggtgtaccaagaaaggaacaatag 13697941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 38154165 - 38154100
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtac 135  Q
    ||||||||||||||||||||||||||||||||  | |||||||||   ||||||||||| ||||||    
T  38154165 ttttttgaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 38154100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 14315223 - 14315277
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagc 124  Q
    |||||| |||||| ||||||| |||||||||||||||||||| |||| |||||||    
T  14315223 tttttttaagaggttaaaatgaaatatattactcaatcaaaaggttcttcctagc 14315277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 41529650 - 41529585
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtac 135  Q
    ||||||||||| ||||||||||||||||||||  ||||||  ||| | ||||||||||| ||||||    
T  41529650 ttttttgaagaagctaaaatggaatatattacgaaatcaatgagtccttcctagcacaaggtgtac 41529585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 1279367 - 1279300
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtacca 137  Q
    ||||||||||||| ||||||| ||||||||||  |||||||| || | ||||| ||||| ||||||||    
T  1279367 ttttttgaagaggttaaaatgaaatatattaccaaatcaaaatgtccttcctaacacaaggtgtacca 1279300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 100
Target Start/End: Original strand, 23710312 - 23710342
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatatta 100  Q
    |||||||||||||||||||||||||||||||    
T  23710312 ttttttgaagaggctaaaatggaatatatta 23710342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 18299440 - 18299472
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattact 102  Q
    ||||||||||| |||||||||||||||||||||    
T  18299440 ttttttgaagaagctaaaatggaatatattact 18299472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 291256 - 291162
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactc-aatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatat 164  Q
    |||||| ||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||  |||||||||||||| ||| ||||||||||    
T  291256 tttttttaagagactaaaatggaatatattactcaaatcaaagagttcttcctagcacaaggtgtgtcaggaaaagaacaa-agttacaaacatat 291162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 28043254 - 28043165
Alignment:
Q  74 ttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatat 164  Q
    ||||||||| |||||||||||||||||| ||||||||  |||| |||||| |||| ||||| |||||||||||||| ||||||||| ||||    
T  28043254 ttgaagaggttaaaatggaatatattacccaatcaaagtgttcttcctagtacaaggtgtatcaggaaaagaacaa-agtcacaaatatat 28043165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 11721857 - 11721786
Alignment:
Q  66 tttcttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtacca 137  Q
    |||||||||||||||||||||||| ||||||||||   |||||||| |||  ||||||||||| ||||||||    
T  11721857 tttcttttttgaagaggctaaaatagaatatattatcaaatcaaaatgtttttcctagcacaaggtgtacca 11721786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 32097981 - 32097887
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatatta-ctcaatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatat 164  Q
    ||||||||||||| ||||| | ||||||||| || ||||||| ||||| |||||| |||| ||||   ||||||||||||| ||||||||||||||    
T  32097981 ttttttgaagaggttaaaaggaaatatattacctaaatcaaagagttcttcctagtacaaggtgtgttaggaaaagaacaa-agtcacaaacatat 32097887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 101
Target Start/End: Complemental strand, 22565432 - 22565401
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattac 101  Q
    ||||||||||||||||||||||||||||||||    
T  22565432 ttttttgaagaggctaaaatggaatatattac 22565401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 18968119 - 18968078
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaa 111  Q
    |||||| |||||||||||||||||||||||||  ||||||||    
T  18968119 tttttttaagaggctaaaatggaatatattacaaaatcaaaa 18968078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 22580379 - 22580415
Alignment:
Q  66 tttcttttttgaagaggctaaaatggaatatattact 102  Q
    ||||||||||||||| | |||||||||||||||||||    
T  22580379 tttcttttttgaagaagttaaaatggaatatattact 22580415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 37536135 - 37536095
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaa 110  Q
    ||||||||||| ||||||||||||||||||||  |||||||    
T  37536135 ttttttgaagaagctaaaatggaatatattacgaaatcaaa 37536095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 37120732 - 37120802
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtaccagga 140  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||  ||||||||||  ||||||||||    
T  37120732 ttttttgaagaggctaaaatggaatatattactaaatcaaagagttctacctagcacaagatgtaccagga 37120802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 6512308 - 6512402
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatat 164  Q
    |||||| |||||| |||||||||||||||||| ||||||||| |||| |||||  | || |||||| || |||||||||| | ||||||||||||    
T  6512308 tttttttaagaggttaaaatggaatatattacccaatcaaaaggttcttcctaatataaggtgtactagaaaaagaacaagaatcacaaacatat 6512402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 20535064 - 20535157
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatat 164  Q
    |||||| ||||| |||||||| ||||||||||||||||||||  ||| |||||| | || |||||| ||||||||||||| | ||||||||||||    
T  20535064 tttttttaagagactaaaatgaaatatattactcaatcaaaatattcttcctagtataaggtgtactaggaaaagaacaa-actcacaaacatat 20535157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 21563676 - 21563610
Alignment:
Q  71 tttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtacca 137  Q
    ||||||||||||||||||||||||||| |||| |||||||| |||| ||||| ||||| ||||||||    
T  21563676 tttttgaagaggctaaaatggaatataatactaaatcaaaatgttcttcctaacacaaggtgtacca 21563610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 21936480 - 21936537
Alignment:
Q  110 aaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatatttac 168  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||||| ||||||||||    
T  21936480 aaagttcctcctaacacaaggtgtaccaggaaaagaacaa-agtcacatacatatttac 21936537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 34443934 - 34443876
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaa 128  Q
    |||||| |||||||||||||||||||||||||  |||||||| |||  |||||||||||    
T  34443934 ttttttaaagaggctaaaatggaatatattaccaaatcaaaatgtttttcctagcacaa 34443876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 27009463 - 27009423
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaa 110  Q
    ||||||||||||||||||||||||||||||| | |||||||    
T  27009463 ttttttgaagaggctaaaatggaatatattattaaatcaaa 27009423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 36176478 - 36176539
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagt 131  Q
    |||||| |||||| ||||||| ||||||||||  |||||||  |||| ||||||||||||||    
T  36176478 tttttttaagaggttaaaatgaaatatattaccaaatcaaagtgttcttcctagcacaaagt 36176539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 43797142 - 43797219
Alignment:
Q  60 attgaatttcttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtacca 137  Q
    ||||| ||| ||||||||||||||||||||||||||||||||  |||||||  |||| ||||||||||| ||||||||    
T  43797142 attgatttttttttttgaagaggctaaaatggaatatattaccaaatcaaagtgttcttcctagcacaaggtgtacca 43797219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 51346056 - 51346154
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatatttac 168  Q
    |||||| |||||| ||||||| |||| || ||||||||||||||||| |||||  |||| | ||| |||||||||||| | | ||||||||||||||||    
T  51346056 tttttttaagaggttaaaatgaaatacatcactcaatcaaaaagttcttcctaatacaaggcgtatcaggaaaagaactagaatcacaaacatatttac 51346154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 17641362 - 17641456
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaat-caaaaagttcctcctagcacaaagtgtaccaggaaaagaacaatagtcacaaacatat 164  Q
    |||||| |||| | |||||||||||| ||||| |||  |||| ||||| |||||||| || ||||||||||||||||| || ||||||||||||||    
T  17641362 tttttttaagaagttaaaatggaatacattacccaaaacaaagagttcttcctagcataaggtgtaccaggaaaagaataa-agtcacaaacatat 17641456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 18690581 - 18690541
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaa 110  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  18690581 tttttttaagaggctaaaatggaatatattactaaatcaaa 18690541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 3694550 - 3694613
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgt 133  Q
    ||||||||||||||||||||| ||||||||||   ||||| ||| || ||||||||||| ||||    
T  3694550 ttttttgaagaggctaaaatgaaatatattaccacatcaataaggtcttcctagcacaaggtgt 3694613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 31050936 - 31050873
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgt 133  Q
    ||||||||||||||||||||| ||||||||||  | |||||| || | ||||||||||| ||||    
T  31050936 ttttttgaagaggctaaaatgaaatatattaccaactcaaaatgtccttcctagcacaaggtgt 31050873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 10436423 - 10436455
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattact 102  Q
    ||||||||||| |||||||||||||||||||||    
T  10436423 ttttttgaagaagctaaaatggaatatattact 10436455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 18651156 - 18651116
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaa 110  Q
    |||||| |||||| ||||||||||||||||||| |||||||    
T  18651156 tttttttaagaggttaaaatggaatatattactaaatcaaa 18651116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 30886921 - 30886860
Alignment:
Q  9 aagcaaaggggttttcacataggagtgttaatcacttataaaaattatgtaattgaatttct 70  Q
    ||||| |||| |||||| |||||||||||||||| ||||||| |||||||||||||||||||    
T  30886921 aagcagagggattttcatataggagtgttaatcatttataaatattatgtaattgaatttct 30886860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 34715182 - 34715142
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaa 110  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  34715182 ttttttgaagaggctaaaatggaatatattactaaatcaaa 34715142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 34017832 - 34017895
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgt 133  Q
    ||||||||||||||||||||| ||||||||||  ||||||| |||   ||||||||||||||||    
T  34017832 ttttttgaagaggctaaaatgaaatatattaccaaatcaaagagtcaatcctagcacaaagtgt 34017895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 17292607 - 17292659
Alignment:
Q  82 gctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtgta 134  Q
    ||||||||| |||||||||||  |||||||||||| ||||| |||||||||||    
T  17292607 gctaaaatgtaatatattactatatcaaaaagttcttcctaacacaaagtgta 17292659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 11012698 - 11012636
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaaagtg 132  Q
    |||||| |||||||| ||||||||||||||||  |||||||| ||   |||||||||||||||    
T  11012698 tttttttaagaggcttaaatggaatatattaccaaatcaaaatgtgtttcctagcacaaagtg 11012636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 1840719 - 1840687
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattact 102  Q
    ||||||||||| |||||||||||||||||||||    
T  1840719 ttttttgaagaagctaaaatggaatatattact 1840687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 45390 - 45332
Alignment:
Q  70 ttttttgaagaggctaaaatggaatatattactcaatcaaaaagttcctcctagcacaa 128  Q
    |||||||||||| ||||||| ||||||||||||||| |||||||||| ||||| |||||    
T  45390 ttttttgaagagactaaaattgaatatattactcaaccaaaaagttcttcctaacacaa 45332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 124178 - 124215
Alignment:
Q  65 atttcttttttgaagaggctaaaatggaatatattact 102  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  124178 attttttttttgaagaagctaaaatggaatatattact 124215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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