View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_low_50 (Length: 215)
Name: NF6510_low_50
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_50 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 3594462 - 3594274
Alignment:
| Q |
1 |
ttataacatggacttgatgtgatgcatgtccataattatcaggcaaatgtttatcatgctaccgattctgatggtcaagaatatgcaattaaaatacaca |
100 |
Q |
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| T |
3594462 |
ttataacatggacttgatgtgatgcatgtccataattatcaggcaaatgtttatcatgctaccgattccgatggtcaagaatatgcaattaaaatacaca |
3594363 |
T |
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| Q |
101 |
aaacatctgttctgggatttaagtaagtaccttgcttgcgtaattcattgttctaacttctcaacgctgaaagttacacaggctactattatc |
193 |
Q |
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| T |
3594362 |
aaacatctgttctgggatttaagtaagtacc----ttgcgtaattgatcgttctaacttctcaacgctgaaagttacacaggctactattatc |
3594274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 28934243 - 28934153
Alignment:
| Q |
40 |
caggcaaatgtttatcatgctaccgattctgatggtcaagaatatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtac |
130 |
Q |
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| T |
28934243 |
caggcaaatgtttatcatgctacaaaatccgatggtcgagaacttgcaattaaaatatacaaaacatctgttctggcatttaagtgagtac |
28934153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 35714611 - 35714666
Alignment:
| Q |
75 |
tcaagaatatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtac |
130 |
Q |
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| T |
35714611 |
tcaagaacttgcaattaaaatatacaaaacatctgttctggtatttaagtaagtac |
35714666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 8490772 - 8490618
Alignment:
| Q |
35 |
attatcaggcaaatgtttatcatgctaccgattctgatggtcaagaatatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtaccttg |
134 |
Q |
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| T |
8490772 |
attatcaggaaaatgtttatcatgataccaattccgatggtaaagaatatgcaattaaaataaacaaaacatctgttctgggatttaagtaagtacc--- |
8490676 |
T |
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| Q |
135 |
cttgcgtaattcattgttctaacttctcaacgctgaaagttacacaggctactattatc |
193 |
Q |
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| T |
8490675 |
-ttgcgtatttgattgttctaacttctgaacgctgaaagttacacaggatactattatc |
8490618 |
T |
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