View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_low_8 (Length: 477)
Name: NF6510_low_8
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_8 |
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| [»] scaffold1291 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Original strand, 40413326 - 40413751
Alignment:
| Q |
19 |
ggagtaagtattcttaacctgataaaagccaacagagttgaatccaagactcaagttgagaaatccaatggaaacaccatttaaaaatccaaaaagcatg |
118 |
Q |
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| T |
40413326 |
ggagtgagtattcttaacctgataaaagccaacagagttgaatccaagactcaagttgagaaatccaatggaaacaccatttaaaaatccaaaaagcatg |
40413425 |
T |
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| Q |
119 |
attgttttcatgtcaatggatttggtcacgaacaagtttagacgttgagccacatgaagtgtacaaaatgtgaccatcaaatgccaacttgtaagcgttg |
218 |
Q |
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| T |
40413426 |
atcgttttcatgtcaatggatttggtgacgaacaagtttagacgttgagccacatgaagtgtacaaaatgtgaccatcaaatgccaacttgtaagcgttg |
40413525 |
T |
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| Q |
219 |
tagctgacccaaatcaaaatcataatttaaagttagtagaataattatgaataataaagttagtgagaaacaaattgattattacgacttaccaaaaggg |
318 |
Q |
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| T |
40413526 |
tagctgacccaaatcaaaatcataatttaaagttagtagaataattatgaataataaagttagtgagaaacaaaatgattattacgacttaccaaaaggg |
40413625 |
T |
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| Q |
319 |
aagccaagcttgctcatcaaggctttgttgcatatgacaatggagacagaagaagctactgagagaaacaatgcaccaataacacccatttggaacttcc |
418 |
Q |
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| T |
40413626 |
aagccaagcttgctcatcaaggctttgttgcatatgacaatggagacagaagaagctactgagagaaacaatgcaccaataacacccaattggaacttcc |
40413725 |
T |
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| Q |
419 |
ccatctctcccattttctgttcaaag |
444 |
Q |
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| T |
40413726 |
ccatctctcccattttctgttcaaag |
40413751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1291 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: scaffold1291
Description:
Target: scaffold1291; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Complemental strand, 2019 - 1607
Alignment:
| Q |
19 |
ggagtaagtattcttaacctgataaaagccaacagagttgaatccaagactcaagttgagaaatccaatggaaacaccatttaaaaatccaaaaagcatg |
118 |
Q |
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| T |
2019 |
ggagtaagtattcttaacctgataaaagccaacagagttgaatccaagactcaagttgagaaatccaatggaaacaccatttaaaaatccaaaaagcatg |
1920 |
T |
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| Q |
119 |
attgttttcatgtcaatggatttggtcacgaacaagtttagacgttgagccacatgaagtgtacaaaatgtgaccatcaaatgccaacttgtaagcgttg |
218 |
Q |
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| T |
1919 |
attgttttcatgtcaattgatttggtcacgaacaagtttagacgttgagccacatgaagtgtacaaaatgtgaccatcaaatgccaacttgtaagcgttg |
1820 |
T |
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| Q |
219 |
tagctgacccaaatcaaaatcataatttaaagttagtagaataattatgaataataaagttagtgagaaacaaattgattattacgacttaccaaaaggg |
318 |
Q |
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| T |
1819 |
tagctgacccaaatcaaaatcataatttaaagttagtagaata---ataaattat----tgggatagaaacaaaatgattattacgacttaccaaaaggg |
1727 |
T |
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| Q |
319 |
aagccaagcttgctcatcaaggctttgttgcatatgacaatggagacagaagaagctactgagagaaacaatgcaccaataacacccatttggaacttcc |
418 |
Q |
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| T |
1726 |
aagccaagcttgctcatcaaggctttgttgcagatgacaatggagacagaagaagctactgagagaaacaatgcaccaataacacccaattggatcttcc |
1627 |
T |
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| Q |
419 |
ccatctctcccattttctgt |
438 |
Q |
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| T |
1626 |
caatctctcccattttctgt |
1607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 21682645 - 21682477
Alignment:
| Q |
56 |
ttgaatccaagactcaagttgagaaatccaatggaaacaccatttaaaaatccaaaaagcatgattgttttcatgtcaatggatttggtcacgaacaagt |
155 |
Q |
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| T |
21682645 |
ttgaagccaaggctcaagttgagaaatccaatggagacaccatttagaataccaaaaagcatgacagtcttcatgtcaacaggtttggcctcaaacagat |
21682546 |
T |
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| Q |
156 |
ttagacgttgagccacatgaagtgtacaaaatgtgaccatcaaatgccaacttgtaagcgttgtagctg |
224 |
Q |
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| T |
21682545 |
tgaaacgtagagccacatgaagggtgcaaaaagtaaccatcaaatgccaacttgtaagtgttgtggctg |
21682477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 406
Target Start/End: Complemental strand, 21682370 - 21682286
Alignment:
| Q |
322 |
ccaagcttgctcatcaaggctttgttgcatatgacaatggagacagaagaagctactgagagaaacaatgcaccaataacaccca |
406 |
Q |
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| T |
21682370 |
ccaagattgctcattaaggctttgttgcatatgacaatggagactgaggaagccacagaaaggaatagtgcaccaataaccccca |
21682286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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