View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6510_low_9 (Length: 460)
Name: NF6510_low_9
Description: NF6510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6510_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 9 - 446
Target Start/End: Complemental strand, 1325362 - 1324925
Alignment:
| Q |
9 |
agcaaaggtcacataagaattttaccttacatgaaattttgtggtgtggtcatgggatggttgagaacaatggaagcaattagagtgcaatgatgaaaaa |
108 |
Q |
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| T |
1325362 |
agcaaaggtcacataagaattttaccttacaagaaattttgtggtgtggtcatgggatggttgagaacaatggaagcaattagagtgcaatgatgaaaaa |
1325263 |
T |
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| Q |
109 |
agaagagagagaaatgagtaatgtttgttagagattaactaggtctctaaaattctactagaggctataagttacaaacgtggattgtgatccgataaat |
208 |
Q |
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| T |
1325262 |
agaagagagagaaatgagtaatgtttgttagagattaactaggtctctaaaattctactagaggctataagttacaaacgtggattgtgatccgataaat |
1325163 |
T |
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| Q |
209 |
gttctaaaagcttaatttagtttccaatcgtttattacctctcacatgtttaattgcatgactgtgaacattaaatttaggatttagaatgtactttaca |
308 |
Q |
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| T |
1325162 |
gttctaaaagcttaatttagtttccaatcgtttattacctctcacatgtttagttgcatgactgtgaacattaaatttaggatttagaatgtactttaca |
1325063 |
T |
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| Q |
309 |
aatcaatttttgttaaaaattttgtctctcattgagctcttatcttatagacccacaaaaaatgccaccttctagcaaatgatatagggcaagtaagtgt |
408 |
Q |
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| T |
1325062 |
aatcaatttttgttaaaaaatttgtctctcattgagctcttatcttatagacccacaaaaaatgccaccttctagcaaatgatatagggcaagtaagtgt |
1324963 |
T |
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| Q |
409 |
ttaatgattccaacttattttcctaattagatggtact |
446 |
Q |
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| T |
1324962 |
ttaatgattccaacttatttgcctaattagatggtact |
1324925 |
T |
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