View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6511_low_1 (Length: 359)
Name: NF6511_low_1
Description: NF6511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6511_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 30099248 - 30098899
Alignment:
| Q |
1 |
tcatcaaatcccattgaaattgaaatcacatcaacaccgtcgttaatagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099248 |
tcatcaaatcccattgaaattgaaatcacatcaacaccgtcgttaatagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaa |
30099149 |
T |
|
| Q |
101 |
tgactttgtacatagcaatcctagcttttggtgcaatgcctcttgctattcctttagcataaccaaaataagaagctccattaacatagttacctacaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099148 |
tgactttgtacatagcaatcctagcttttggtgcaatgcctcttgctattcctttggcataaccaaaataagaagctccattaacatagttacctacaag |
30099049 |
T |
|
| Q |
201 |
ttcaaagcagacagttcgattggtaagctcagagacaccgaatgagtactagctaggaagtcgagagttcaaacaccggaaactaacataatttactaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30099048 |
ttcaaagcagacagttcgattggtaagctcagagacaccgaatgagtactagctaggaagtcgagagttcaaacaccggaaactaacataatttactaac |
30098949 |
T |
|
| Q |
301 |
atttgtctccaaccacnnnnnnnntagttacctgcaacagttgatgatgt |
350 |
Q |
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||||||||||||| || |||||||||||||||||||||||||| |
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| T |
30098948 |
atttgtctccaacaacaaaaaaaatagttacctgcaacagttgatgatgt |
30098899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 30091666 - 30091914
Alignment:
| Q |
2 |
catcaaatcccattgaaattgaaatcacatcaacaccgtcgttaatagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaat |
101 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| || ||| |||||||||||||||| |
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| T |
30091666 |
catcaaatcccatagaaattgaaatcacatcaacaccatcagcaatagcttggtccattccagctaaaacatcagaagccaaaagaccctcttcccaaat |
30091765 |
T |
|
| Q |
102 |
gactttgtacatagcaatcctagcttttggtgcaatgcctcttgctattcctttagcataaccaaaataagaagctccattaacatagttacctacaagt |
201 |
Q |
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|
||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||| |||| |
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| T |
30091766 |
gactttgtacatagcaagcctagctcttggtgcaatgcctcttgctactcctttagcataaccaaaataagaagttccattgacatagttacct-gaagt |
30091864 |
T |
|
| Q |
202 |
tcaaagcagacagttcgattggtaagctcagagacaccgaatgagtacta |
251 |
Q |
| |
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| |||||||||| |||||| ||||||| |||| || ||| |||||||| |
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| T |
30091865 |
ccgaagcagacagctcgattagtaagctgagagttacagaaggagtacta |
30091914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 30087686 - 30087879
Alignment:
| Q |
2 |
catcaaatcccattgaaattgaaatcacatcaacaccgtcgttaatagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaat |
101 |
Q |
| |
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|||||| ||| || |||||||||||||| |||||||| || |||| ||||||||||| ||||||||||||||||| || | | | ||||||||||||| |
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| T |
30087686 |
catcaattccaatagaaattgaaatcacgtcaacaccatcaataattgcttggtccattccagctaaaacatcagaagccataacatcctcttcccaaat |
30087785 |
T |
|
| Q |
102 |
gactttgtacatagcaatcctagcttttggtgcaatgcctcttgctattcctttagcataaccaaaataagaagctccattaacatagttacct |
195 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || |||||||||||| |
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| T |
30087786 |
gactttgtacatagcaatcttagcttttggtgcaatgcctcttgctactcctttagcatagccaaaataagaagctccgttgacatagttacct |
30087879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 35171429 - 35171551
Alignment:
| Q |
45 |
aatagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaatgactttgtacatagcaatcctagcttttggtgcaatgcctctt |
144 |
Q |
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||||||||| ||||| || || | ||||||||| || | |||||| || ||||||| ||||| ||||| ||||| ||||||||||||||||| ||||| |
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| T |
35171429 |
aatagcttgatccattcctgcaagaacatcagaagctagacgaccttcgtcccaaagtactttatacattgcaattctagcttttggtgcaatacctcta |
35171528 |
T |
|
| Q |
145 |
gctattcctttagcataaccaaa |
167 |
Q |
| |
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|||| ||||| ||||||||||| |
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| T |
35171529 |
gctacaccttttgcataaccaaa |
35171551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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