View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6512_high_1 (Length: 532)
Name: NF6512_high_1
Description: NF6512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6512_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 13 - 506
Target Start/End: Original strand, 45728581 - 45729078
Alignment:
| Q |
13 |
catcacattcaaaaaagaataagaatgagaatgttgaacgtgggtcgtcttgtgggtcagccgatgttgcttgcttgagccttgagcttcactaaacgac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45728581 |
catcacattcaaaaaagaataagaatgagaatgttgaacgtgggtcgtcttgtgggtcagccgatgttgcttgcttgagccttgagcttcactaaacgac |
45728680 |
T |
|
| Q |
113 |
tggataacagacggccatttccttcaacca-tcaatatgggaatccacccacattatccacacggaactccaattatttctactgatcaaagtcgaagca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45728681 |
tggataacagacggccatttccttcaaccattcaatatgggaatccacccacattatccacacggaactccaattatttctactgatcaaagtcgaagca |
45728780 |
T |
|
| Q |
212 |
agca-tattttctttttggttacaatgcgaaaaggaagcaagcatatttgaaatttcggattct--tatatttgattgcattaactgtattccttattac |
308 |
Q |
| |
|
|||| | |||| |||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
45728781 |
agcatttttttttttttggttacaatgcaaaaaggaagcaagcatatttgaaatttcagattcttatatatttgattgcatcaactgtattccttattac |
45728880 |
T |
|
| Q |
309 |
aaattgtttaaactttcagatgaaacttcattatcatattagtataattatcctaagaaacacaagcattgtatatgctagctcaacgtcattgcaggtt |
408 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45728881 |
aaattgtttaaaatttcagatgaaacttcattatcatattagtataattatcctaagaaacacaagcattgtatatgctagctcaacgtcattgcag--t |
45728978 |
T |
|
| Q |
409 |
aatatctccatttctccatggaaaacgaatatggcgaatataaata--nnnnnnnatatatatagcccctacatatctgagcattaagtttcattattaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45728979 |
aatatctccatttctccatggaaaacgaatatggcgaatataaatatttttttttatatatatagcccctacatatctgagcattaagtttcattattaa |
45729078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 45734894 - 45735028
Alignment:
| Q |
23 |
aaaaaagaataagaatgagaatgttgaacgtgggtcgtcttgtgggtcagccgatgttgcttgcttgagccttgagcttca-------ctaaacgactgg |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||||||| |||||||||| |||||| |||||||| ||||||||||| ||||| |||||| |
|
|
| T |
45734894 |
aaaaaagaataagaataagaatgttgaagttgtgtcgtctcgtgggtcagctgatgttacttgcttg---cttgagcttcactaaagtctaaatgactgg |
45734990 |
T |
|
| Q |
116 |
ataacagacggccatttccttcaacca-tcaatatggg |
152 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
45734991 |
ataacagacggccatttccttccaccattcaatatggg |
45735028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 249 - 313
Target Start/End: Original strand, 45735044 - 45735108
Alignment:
| Q |
249 |
caagcatatttgaaatttcggattcttatatttgattgcattaactgtattccttattacaaatt |
313 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
45735044 |
caagcatatttaaaattttagattcttatatttgattgtattagctgtatttcttattacaaatt |
45735108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 511
Target Start/End: Original strand, 45724870 - 45724903
Alignment:
| Q |
478 |
catatctgagcattaagtttcattattaagcaat |
511 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
45724870 |
catatgtgagcattaagtttcattattaagcaat |
45724903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University