View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6512_high_2 (Length: 392)
Name: NF6512_high_2
Description: NF6512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6512_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 60 - 260
Target Start/End: Complemental strand, 38841072 - 38840872
Alignment:
| Q |
60 |
gtgtaatgaactgatattgagtctgttgatatatgattctgctatggtttttcatgtttggtgtaatgaattgaaatttttgtatatttgataatatttt |
159 |
Q |
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| T |
38841072 |
gtgtaatgaactgatattgagtctgttgatatatgattctgctatggtttttcatgtttggtgtaatgaattgaagtttttgtatatttgataatatttt |
38840973 |
T |
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| Q |
160 |
ggtatatgctcaatcggtgaatcaattttgatgcatacaatgtagaatcaccgccgacatctgtttgattctannnnnnnggattaaggatcttgttatg |
259 |
Q |
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| T |
38840972 |
gttatatactcaatcggtgactcaattttgatgcatacaatgtagaatcaccgccgacatctgtttgattttatttttttggattaaggatcttgttatg |
38840873 |
T |
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| Q |
260 |
g |
260 |
Q |
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| T |
38840872 |
g |
38840872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 9876342 - 9876281
Alignment:
| Q |
148 |
tgataatattttggtatatgctcaat-cggtgaatcaattttgatgcatacaatgtagaatc |
208 |
Q |
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| T |
9876342 |
tgataatattttggtatatgctcaataaggtgcctccattttagtgcatacaatgtagaatc |
9876281 |
T |
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