View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6512_high_5 (Length: 316)
Name: NF6512_high_5
Description: NF6512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6512_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 28736812 - 28737101
Alignment:
| Q |
18 |
acaatggtataattggaaaagtataattaatgtcattgaaaaataaaaatgacaattattttagaacaaactctatttgcaaatagattaagcattatga |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28736812 |
acaatgttataattggaaaagtataattaatgtcattgaaaattaaaaatgacaattattttagaacaaactctatttgcaaatagattaagcattatga |
28736911 |
T |
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| Q |
118 |
aacaaagtgcaaaacttgttttcatatctcctttgacggcttgaatttgttgtatgcaatatgcaccataaactttgcataggattctaagccaaa-tgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28736912 |
aacaaagtgcaaaacttgttttcatatctcctttgacggcttgaatttgttgtatgcaatatgcaccataaactttgcataggattctaagccaaattgg |
28737011 |
T |
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| Q |
217 |
catcaacaatgattg-aaaattttatattttactctccttatacttaactggatgtctctactatagtgtaactaatttaccttttccta |
305 |
Q |
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||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28737012 |
catcaacaatgattgaaaaaatttattttttactctccttatacttaactggatgtctctactatagtgtaactaatttaccttttccta |
28737101 |
T |
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