View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6512_low_10 (Length: 236)
Name: NF6512_low_10
Description: NF6512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6512_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40518067 - 40518287
Alignment:
| Q |
1 |
catctataaatactaatatctcgagttggatagagttataatataccatgaaaaattcctctcacgactagtagttaaatctggttccataactagttaa |
100 |
Q |
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| T |
40518067 |
catctataaatactaatatctcgagttggatagagttataatatacgatgaaaaattcctctcacgactagtagttaaatctggttccataactagttaa |
40518166 |
T |
|
| Q |
101 |
aatagatgagacccgaactatcttatacaattgaaaattaaataatctaacgtgcgcatatatattgatgataatatgccaggatcatcccatgtccgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40518167 |
aatagatgagacccgaactatcttatacaattgaaaattaaataatctaatgtgcgcatatatattgatgataatatgccaggatcatcccatgtccgta |
40518266 |
T |
|
| Q |
201 |
atttctcccttgctagtttga |
221 |
Q |
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|||| |||||||||||||||| |
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| T |
40518267 |
atttttcccttgctagtttga |
40518287 |
T |
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