View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6512_low_3 (Length: 365)
Name: NF6512_low_3
Description: NF6512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6512_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 2 - 346
Target Start/End: Original strand, 3466181 - 3466525
Alignment:
| Q |
2 |
gattgtccgatttctctcaattttgtcaaaaaacttctcagttgtggacaaccttcaatgtcaaggtttctaagattatgcaacatatcaatgttttcag |
101 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3466181 |
gattgtcctaattctctcaattttgtcaaaaagcttctaagttgtggacaaccttcgatatcaaggtttctaagattatgcaacatatcaatgttttcag |
3466280 |
T |
|
| Q |
102 |
gaagttccttgagactcaagcaagatgtcatgcttaattcttgaagagcaacgagatttccaatggaaggaggcaattcttcaataccagtgccttcaat |
201 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3466281 |
gaagttcctttagactcaagcaagatgtcatgcttaattcttgaagagcaacaagatttccaatggacggaggcaattcttcaataccagtgccttcaat |
3466380 |
T |
|
| Q |
202 |
agaaatagatatgagattatccattttgcctaaaattgttgggaatgtttgaagacttgaacaccaattaagaattagacttttcaatgatgacaatttg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3466381 |
agaaatagatatgagattatccattttgcctaaaattgtagggaatgtttgaagacttgagcaccaattaagaattagacttttcaatgatgacaatttg |
3466480 |
T |
|
| Q |
302 |
attgcatgtggaaaatccttaagcttagtgcatccataagccctc |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3466481 |
attgcatgtggaaaatccttaagcttagtgcatccataagccctc |
3466525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University