View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6512_low_9 (Length: 244)
Name: NF6512_low_9
Description: NF6512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6512_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 39 - 226
Target Start/End: Original strand, 38841153 - 38841340
Alignment:
| Q |
39 |
aaatcaacaaatcactacctgcttatacttcttcaaacgacgtccatcaacaatctcaataacaaactccttcgaaaaaatattggtgagcttagcacca |
138 |
Q |
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| T |
38841153 |
aaatcaacaaatcactacctgcttatacttcttcaaacgacgtccatcaacaatctcaataacaaactccttcgaaaaaatattggtgagcttagcacca |
38841252 |
T |
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| Q |
139 |
taaccatttctcccaccagtagttttcttcacattataatcatagttaaggtgaccaaagaacaattcaggaacataaacattctctt |
226 |
Q |
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| T |
38841253 |
taaccatttctcccaccagtagttttcttcacattataatcatagttaaggtgaccaaagaacaattcaggaacataaacattctctt |
38841340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 9877231 - 9877358
Alignment:
| Q |
48 |
aatcactacctgcttatacttcttcaaacgacgtccatcaacaatctcaataacaaactccttcgaaaaaatattggtgagcttagcaccataaccattt |
147 |
Q |
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||||||||||||||||||||||||||| | ||||||||| || | |||||||||||||| |||| |||||||| |||||||||||||||||||| ||| |
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| T |
9877231 |
aatcactacctgcttatacttcttcaacctccgtccatcagcagtttcaataacaaactcagtcgagaaaatattcgtgagcttagcaccataaccgttt |
9877330 |
T |
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| Q |
148 |
ctcccaccagtagttttcttcacattat |
175 |
Q |
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| T |
9877331 |
cttccaccagtagttttcttcacattat |
9877358 |
T |
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