View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6513_high_12 (Length: 239)
Name: NF6513_high_12
Description: NF6513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6513_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27436060 - 27436281
Alignment:
| Q |
1 |
cttggcattctcgatgccgaacgatagagaagatccaataatccagcaggtggtcgacaagggaggagctgagtatcaatttaatgaattcaagcaaagg |
100 |
Q |
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| T |
27436060 |
cttggcattctcgatgccgaaggatagagaagatccaataatccagcaggtggtcgataagggaggagctgagtatcaatttaatgaattcaagcaaagg |
27436159 |
T |
|
| Q |
101 |
tttggtaaggtttattcctccaaagatgaacatgattataggttcaatgtcttcaagtctaaccttcaccgtgctaagagacatgggataatggatcctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27436160 |
tttggtaaggtttattcctccaaagatgaacatgattataggttcaacgtcttcaagtctaaccttcaccgtgctaagagacatgggataatggatcctt |
27436259 |
T |
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| Q |
201 |
ccgcaactcatggtgttacaag |
222 |
Q |
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| T |
27436260 |
cagcaactcatggtgttacaag |
27436281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27944552 - 27944773
Alignment:
| Q |
1 |
cttggcattctcgatgccgaacgatagagaagatccaataatccagcaggtggtcgacaagggaggagctgagtatcaatttaatgaattcaagcaaagg |
100 |
Q |
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|||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27944552 |
cttggcattctcgacgccaaacgaccgagaagatccaataatccagcaggtggtcgataagggaggagctgagtatcaatttaatgaattcaagcaaagg |
27944651 |
T |
|
| Q |
101 |
tttggtaaggtttattcctccaaagatgaacatgattataggttcaatgtcttcaagtctaaccttcaccgtgctaagagacatgggataatggatcctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27944652 |
tttggtaaggtttattcctccaaagatgaacatgattataggttcaatgtcttcaagtctaaccttcaccgtgctaagagacatgggataatggatcctt |
27944751 |
T |
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| Q |
201 |
ccgcaactcatggtgttacaag |
222 |
Q |
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| |||||||||||||||||||| |
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| T |
27944752 |
cagcaactcatggtgttacaag |
27944773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27550176 - 27549955
Alignment:
| Q |
1 |
cttggcattctcgatgccgaacgatagagaagatccaataatccagcaggtggtcgacaagggaggagctgagtatcaatttaatgaattcaagcaaagg |
100 |
Q |
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|||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27550176 |
cttggcattctcgacgccaaacgaccgagaagatccaataatccagcaggtggtcgataagggaggagctgagcatcaatttaatgaattcaagcaaagg |
27550077 |
T |
|
| Q |
101 |
tttggtaaggtttattcctccaaagatgaacatgattataggttcaatgtcttcaagtctaaccttcaccgtgctaagagacatgggataatggatcctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27550076 |
tttggtaaggtttattcctccaaagatgaacatgattataggttcaacgtcttcaagtctaaccttcaccgtgctaagagacatgtgataatggatcctt |
27549977 |
T |
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| Q |
201 |
ccgcaactcatggtgttacaag |
222 |
Q |
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| |||||||||||||||||||| |
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| T |
27549976 |
cggcaactcatggtgttacaag |
27549955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 26764904 - 26764984
Alignment:
| Q |
100 |
gtttggtaaggtttattcctccaaagatgaacatgattataggttcaatgtcttcaagtctaaccttcaccgtgctaagag |
180 |
Q |
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|||||| ||||||||||| ||||| |||||||||||||| ||||| || ||||||||||||| || ||||||||||||| |
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| T |
26764904 |
gtttgggaaggtttattcttccaaggatgaacatgattacaggtttaaaatcttcaagtctaatctgaaccgtgctaagag |
26764984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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