View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6513_high_2 (Length: 400)
Name: NF6513_high_2
Description: NF6513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6513_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 384
Target Start/End: Complemental strand, 32895793 - 32895417
Alignment:
| Q |
8 |
gacatcatcacaataatttgatatcaaagttagttttatgcactaatgaataacacaataatttaacattaacaatttcaaaatttatattgtgcttaat |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32895793 |
gacatcttcacaataatttgatatcaaagttagttttatgcactaatgaataacacaataatttaacattaacaatttctaaatttatattgtgcttaat |
32895694 |
T |
|
| Q |
108 |
gaaacatgttctattatgagctgaaacataattctttatatatttgacaacttgacataagaaacaaagctatcattcatgcttttttctgtttatctta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32895693 |
gaaacatgttctattatgagctgaaacataatgcttgatatatttgacaacttgacataagaaacaaagctatcattcatgcttttttctgtttatctta |
32895594 |
T |
|
| Q |
208 |
tggtggtggaaagatagctttaaccaagcagtgctgaaaagtaaatatgagtggattcaaattactcgactcttttcagttaaattagactctactgcaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32895593 |
tggtggtggaaagatagctttaaccaggcagtgttgaaaagtaaatatgagtgaattcaaattactcgactcttttcagttaaattagactctactgcaa |
32895494 |
T |
|
| Q |
308 |
gagtcactgcatgttattgttatgtatctctatttatgtgagaattattatacgatttcagctagtgttggaaaata |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32895493 |
gagtcactgcatgttattgttatgtatctctatttatgtgagaattattatacgatttcagctagtgttggaaaata |
32895417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 32892550 - 32892503
Alignment:
| Q |
183 |
ttcatgcttttttctgtttatcttatggtggtggaaagatagctttaa |
230 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| || ||||||||||||| |
|
|
| T |
32892550 |
ttcatgcttttttctgtttaacttctggtggggggaagatagctttaa |
32892503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 16753349 - 16753284
Alignment:
| Q |
256 |
gagtggattcaaattactcgactcttttcagttaaattagactctactgcaagagtcactgcatgt |
321 |
Q |
| |
|
|||||||||||| ||| | |||||||||| |||||| |||||||| |||| |||||||||||||| |
|
|
| T |
16753349 |
gagtggattcaagttaattgactcttttcgattaaatcagactctattgcacgagtcactgcatgt |
16753284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University