View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6513_high_4 (Length: 347)
Name: NF6513_high_4
Description: NF6513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6513_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 14 - 330
Target Start/End: Original strand, 47846420 - 47846733
Alignment:
| Q |
14 |
aatatggttgtaaaatatgttgatcagaaattaaattagatgaagaattctgatcactccttcttccattgctctcatgattagcactagctaataattt |
113 |
Q |
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| T |
47846420 |
aatatggttgtaaaatatgttgatcagaaattaaattagatgaagaattct---cactccttcttccattgctctcatgattagcactagctaataattt |
47846516 |
T |
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| Q |
114 |
attacgtgcttgtaattgttgttctttacgatgcttccctaaaagcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttccc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47846517 |
attacgtgcttgtaattgttgttctttacgatgcttcccaaaaagcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttccg |
47846616 |
T |
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| Q |
214 |
ggcaattgacccgcaatcaccgaccatctgcgcgcggcatcaaacaaattaaaccgaaattaataagcataattgttttgctttatacaccgatatttca |
313 |
Q |
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| T |
47846617 |
ggcaattgacccgcaatcaccgaccatctgcgcgcggcatcaaacaaattaaaccgaaattaataagcataattgttttgctttatacaccgatatttca |
47846716 |
T |
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| Q |
314 |
gattaaatacatgttgt |
330 |
Q |
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| T |
47846717 |
gattaaatacatgttgt |
47846733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 14778734 - 14778786
Alignment:
| Q |
157 |
agcttctttttcagttttgtgttccaatagttctttatatcattatcggttct |
209 |
Q |
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| T |
14778734 |
agcttctttttcagctttgtgttccaattgttcttaacatcattgtctgttct |
14778786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 113 - 244
Target Start/End: Complemental strand, 4686218 - 4686087
Alignment:
| Q |
113 |
tattacgtgcttgtaattgttgttctttacgatgcttccctaaaagcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcc |
212 |
Q |
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|||||||||||||| |||||| |||||||| || ||||| |||||||||||||||| |||| ||||||||||||||||| |||||||| |||||||| |
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| T |
4686218 |
tattacgtgcttgttgttgttgatctttacggtgtttccccaaaagcttctttttcaaccttgtattccaatagttctttatgtcattatcagttcttcc |
4686119 |
T |
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| Q |
213 |
cggcaattgacccgcaatcaccgaccatctgc |
244 |
Q |
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| T |
4686118 |
tggcaattgagctgcaattatcgaccacctgc |
4686087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 38720108 - 38720066
Alignment:
| Q |
179 |
tccaatagttctttatatcattatcggttcttcccggcaattg |
221 |
Q |
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| T |
38720108 |
tccaatagttctttatttcattgtcggttcttcccggtaattg |
38720066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 40253987 - 40254055
Alignment:
| Q |
153 |
taaaagcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcccggcaattg |
221 |
Q |
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| T |
40253987 |
taaaagtttcttcttcaactttgtgttccaatagttctttatatcattatccgttcgtcctggtaattg |
40254055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 40819427 - 40819489
Alignment:
| Q |
160 |
ttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcccggcaattga |
222 |
Q |
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||||| || |||||||||||||| ||||| || ||||||||||| |||||||| || |||||| |
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| T |
40819427 |
ttcttctttagttttgtgttccagtagtttttgatatcattatcagttcttcctggtaattga |
40819489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 13297844 - 13297808
Alignment:
| Q |
179 |
tccaatagttctttatatcattatcggttcttcccgg |
215 |
Q |
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|||| ||||||||||| |||||||||||||||||||| |
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| T |
13297844 |
tccagtagttctttatctcattatcggttcttcccgg |
13297808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 33928495 - 33928531
Alignment:
| Q |
174 |
tgtgttccaatagttctttatatcattatcggttctt |
210 |
Q |
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| T |
33928495 |
tgtgttccaataattctttatatcattatctgttctt |
33928531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 5113943 - 5113879
Alignment:
| Q |
157 |
agcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcccggcaattg |
221 |
Q |
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|||||||| ||||| | |||||||| |||||||||||||||||||| |||| ||| || ||||| |
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| T |
5113943 |
agcttcttcttcagcctagtgttccagtagttctttatatcattatccgttcgtcctggtaattg |
5113879 |
T |
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