View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6513_low_1 (Length: 580)
Name: NF6513_low_1
Description: NF6513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6513_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 9 - 556
Target Start/End: Complemental strand, 49298488 - 49297947
Alignment:
| Q |
9 |
gagatgaagtgaatgtgagctatggtatagtgatggagatatagatgtgatcatatctttctgtttagaaacttttttgttaccgatatcattgtatatg |
108 |
Q |
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| T |
49298488 |
gagatgaagtgaatatgagctatggtatagtgatggagatatagatgttatcatatctttctgtttagaaacttttttgttatcga-atcattgtatatg |
49298390 |
T |
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| Q |
109 |
tnnnnnnnnnnnnntgtcgtcaatatttgaacgagtgtaaactctaatgactattttgaccctgtgaataatgttattgaaatgactctcttaaccgcgt |
208 |
Q |
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| T |
49298389 |
gaggggggcacc---gtcgtcaatatttgaacgagtgtaaactctaatgactattttgaccctgtgaat---gtaattgaaatgactctcttaaccgcgt |
49298296 |
T |
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| Q |
209 |
gaggatcatgatcaaaaacgaaaaaggtattaacttgatttcccgcccaaaacagggaagttttgcacggaataaggaagaaattcaatgtcttggtata |
308 |
Q |
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| T |
49298295 |
gaggatcatgatcgaaaacgaaaaaggtattaacttgatttcccgcccaaaacagggaagttttgcacggaataaggaagaaattcaatgtcttggtata |
49298196 |
T |
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| Q |
309 |
tctctataaacggcaacggcaatccatgtgatta-nnnnnnnncttaattattacttttaagttttagcttctttaataaaacaaactcatatcttttgt |
407 |
Q |
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| T |
49298195 |
tctctataaacggcaacggcaatccatgtgattatttttttttcttaattattacttttaagttttagcttctttaataaaacacactcatatcttttgt |
49298096 |
T |
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| Q |
408 |
ttccagatttgttaatgaagaaaggccggaacactaggtgtcatctagaaggaacatttggcaccgtatgtgggaagagaaagaatcttcccactaattt |
507 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
49298095 |
ttcctgatttgttaatgaagaaaggccggaacactaggtgtcatctagaaggaacatttggcaccgtatgtgggaagagaaagaatcttctcactgattt |
49297996 |
T |
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| Q |
508 |
ctcatcatttgagaacatatgatacgatccacatctagtggcaaacgtg |
556 |
Q |
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| T |
49297995 |
ctcatcatttgagaacatatgatacgatccacatccagtggcaaacgtg |
49297947 |
T |
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