View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6513_low_12 (Length: 252)

Name: NF6513_low_12
Description: NF6513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6513_low_12
NF6513_low_12
[»] chr4 (2 HSPs)
chr4 (12-252)||(9498836-9499076)
chr4 (39-86)||(56201173-56201220)
[»] chr7 (5 HSPs)
chr7 (13-154)||(18846185-18846325)
chr7 (13-154)||(15660280-15660420)
chr7 (45-202)||(47790300-47790458)
chr7 (23-90)||(36692251-36692318)
chr7 (104-202)||(15660179-15660278)
[»] chr1 (6 HSPs)
chr1 (14-154)||(34624211-34624350)
chr1 (14-150)||(20039505-20039641)
chr1 (14-150)||(29403633-29403769)
chr1 (104-174)||(29403830-29403900)
chr1 (104-172)||(20039431-20039499)
chr1 (16-47)||(11375456-11375487)
[»] chr8 (4 HSPs)
chr8 (13-154)||(20293201-20293343)
chr8 (13-154)||(21079832-21079974)
chr8 (13-150)||(13955753-13955888)
chr8 (23-144)||(2108287-2108409)
[»] chr6 (4 HSPs)
chr6 (24-145)||(29355339-29355460)
chr6 (13-152)||(19058850-19058986)
chr6 (14-74)||(7492158-7492218)
chr6 (104-174)||(19058990-19059060)
[»] chr2 (2 HSPs)
chr2 (14-126)||(23218993-23219105)
chr2 (19-73)||(44672766-44672821)
[»] chr3 (1 HSPs)
chr3 (78-150)||(28914400-28914472)
[»] scaffold0692 (1 HSPs)
scaffold0692 (39-86)||(5006-5053)
[»] chr5 (1 HSPs)
chr5 (19-47)||(43575459-43575487)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 9499076 - 9498836
Alignment:
12 atgaaaggataaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
9499076 atgaaaggataaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaacaaactttcttaat 9498977  T
112 gtctcaccctctaggcttcccactcttatataactgaaattcttcctagattccagtaaatatactatcttttgtattcccacagcttctataagctgtg 211  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9498976 gtctcaccctctaggcttccctctcttatataactgaaattcttcctagattccagtaaatatactatcttttgtattcccacagcttctataagctgtg 9498877  T
212 cttgtttgggaaaacacatgtataggttatatcggtatgta 252  Q
    |||||||||||||||||||||||||||||||||||||||||    
9498876 cttgtttgggaaaacacatgtataggttatatcggtatgta 9498836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 56201220 - 56201173
Alignment:
39 actcctaccagagctaagctcctagaccagagagaacttctctcctaa 86  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||    
56201220 actcctaccagagctaggctcctagaccagagagaacatctctcctaa 56201173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 18846185 - 18846325
Alignment:
13 tgaaaggataaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatg 112  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
18846185 tgaaaagataaaccagagttctgagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttctgaatg 18846284  T
113 tctcaccctctaggcttcccactcttatataactgaaattct 154  Q
     || | ||||||| || ||| ||||| |||||||||||||||    
18846285 cctta-cctctagactcccccctcttttataactgaaattct 18846325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 15660420 - 15660280
Alignment:
13 tgaaaggataaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatg 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||    
15660420 tgaaaagataaaccagagttcagagaactcctaccagagctaagctcctagaccagaaagaacttctctcctaaacaactcttaacaaactttctgaatg 15660321  T
113 tctcaccctctaggcttcccactcttatataactgaaattct 154  Q
     || |  |||||| || ||| ||||| |||||| ||||||||    
15660320 cctta-tctctagactcccccctcttttataacggaaattct 15660280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 45 - 202
Target Start/End: Original strand, 47790300 - 47790458
Alignment:
45 accagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccctctaggcttcccactcttatataa 144  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||  |||||||||||| ||||| || ||  ||||    
47790300 accagagttaagctcctagaccagagagaacttctctcctaaacaactcttaagaaactttctgactgcttcaccctctaggattccctctgtttaataa 47790399  T
145 ctgaaattcttcctagattccagtaaatatactatct-tttgtattcccacagcttcta 202  Q
    |||||||||||||| ||||||| ||| ||| |||  | ||||| |||||||||||||||    
47790400 ctgaaattcttccttgattccaataattattctaaatgtttgtgttcccacagcttcta 47790458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 36692318 - 36692251
Alignment:
23 aaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaa 90  Q
    |||||||||||   |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
36692318 aaccagagttctatgaactcctaccagagctaagctcctagaacagagagaacttctctcctaaacaa 36692251  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 104 - 202
Target Start/End: Complemental strand, 15660278 - 15660179
Alignment:
104 ttcttaatgtctcaccctctaggcttcccactcttatataactgaaattcttcctagattccagtaaatatactatct-tttgtattcccacagcttcta 202  Q
    ||||||||| || |||||||||||||||| |||||  ||||||| |||||| |||| |||||| ||| |||  || || |||||||||||||||||||||    
15660278 ttcttaatgactgaccctctaggcttccctctcttcaataactgcaattctgcctaaattccaataattattataactgtttgtattcccacagcttcta 15660179  T

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Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 34624211 - 34624350
Alignment:
14 gaaaggataaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgt 113  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||||||||     
34624211 gaaatgattaaccatagttcagagaactcctaccagagctaagctcctagaccagagacaacttttctcctaaacaactctt-acaaactttcttaatgc 34624309  T
114 ctcaccctctaggcttcccactcttatataactgaaattct 154  Q
    ||||||||||||||||||| ||||| ||||||| |||||||    
34624310 ctcaccctctaggcttccctctcttttataactaaaattct 34624350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 20039641 - 20039505
Alignment:
14 gaaaggataaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgt 113  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||  ||| |||||  |||     
20039641 gaaatgataaaccagagtttagagaactcctaccagagctaagctcctagaccagaaagaacttctctcctagacaactcttactaaattttctgtatgc 20039542  T
114 ctcaccctctaggcttcccactcttatataactgaaa 150  Q
     |||||||||||||||| | ||||| |||||||||||    
20039541 atcaccctctaggcttctctctcttttataactgaaa 20039505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 29403633 - 29403769
Alignment:
14 gaaaggataaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgt 113  Q
    |||| |||||||||| |||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||     
29403633 gaaatgataaaccagggttcagagaacttctacccgagccaagctccaagaccagagagaacttctctcctaaacaactcttaataaactttctgaatga 29403732  T
114 ctcaccctctaggcttcccactcttatataactgaaa 150  Q
     ||||||||||| ||||||  |||| |||||||||||    
29403733 atcaccctctagacttccctatcttttataactgaaa 29403769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 29403830 - 29403900
Alignment:
104 ttcttaatgtctcaccctctaggcttcccactcttatataactgaaattcttcctagattccagtaaatat 174  Q
    ||||||||| || |||||| ||||||||| |||||  |||||||||| ||||||||||||||| |||||||    
29403830 ttcttaatgactaaccctcaaggcttccctctctttaataactgaaactcttcctagattccaataaatat 29403900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 20039499 - 20039431
Alignment:
104 ttcttaatgtctcaccctctaggcttcccactcttatataactgaaattcttcctagattccagtaaat 172  Q
    ||||||||| || |||||||||||||||  |||||  |||||||||| ||||||||||||||| |||||    
20039499 ttcttaatgactaaccctctaggcttccttctcttgaataactgaaactcttcctagattccaataaat 20039431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 11375456 - 11375487
Alignment:
16 aaggataaaccagagttcagagaactcctacc 47  Q
    ||||||||||||||||||||||||||||||||    
11375456 aaggataaaccagagttcagagaactcctacc 11375487  T

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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 20293201 - 20293343
Alignment:
13 tgaaaggataaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||||||||| ||||    
20293201 tgaaaggataaaccagagttcagagaactcctaccagagctaagctcctatacaagagagaacttctctcctaaacaactcttagcaaactttctgaatg 20293300  T
113 tctcaccctcta-ggcttcccactcttatataactgaaattct 154  Q
     ||| ||||||| ||||| || ||| | |||||||||||||||    
20293301 cctccccctctagggctttcctctcctctataactgaaattct 20293343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 21079832 - 21079974
Alignment:
13 tgaaaggataaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||||||||| ||||    
21079832 tgaaaggataaaccagagttcagagaactcctaccagagctaagctcctatacaagagagaacttctctcctaaacaactcttagcaaactttctgaatg 21079931  T
113 tctcaccctcta-ggcttcccactcttatataactgaaattct 154  Q
     ||| ||||||| ||||| || ||| | |||||||||||||||    
21079932 cctccccctctagggctttcctctcctctataactgaaattct 21079974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 13955753 - 13955888
Alignment:
13 tgaaaggataaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatg 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| ||||    
13955753 tgaaaggattaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactctt-agcaactttctgaatg 13955851  T
113 tctcaccctctaggcttcccactcttatataactgaaa 150  Q
     || | ||||||| || ||| ||||| |||||||||||    
13955852 cctta-cctctagactcccccctcttttataactgaaa 13955888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 2108287 - 2108409
Alignment:
23 aaccagagttcagagaactccta-ccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccct 121  Q
    |||||||||||   ||||||||| ||||||||| |||||||||||||||| || |||||||||||  ||||||||||| ||||||  |||| ||||| |     
2108287 aaccagagttctatgaactcctaaccagagctaggctcctagaccagagaaaatttctctcctaacaaactcttaaaatactttcccaatgactcactca 2108386  T
122 ctaggcttcccactcttatataa 144  Q
    ||||||||||| ||||| |||||    
2108387 ctaggcttccctctcttctataa 2108409  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 29355339 - 29355460
Alignment:
24 accagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgtctcaccctct 123  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | |||| || || ||||    
29355339 accagagctcagagaactcctaccagagctaagctcctagaccagatagaacttctctcctaaacaactcttaacaaactttatgaatgccttactctct 29355438  T
124 aggcttcccactcttatataac 145  Q
    |||||| || ||||| ||||||    
29355439 aggctttcctctcttttataac 29355460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 19058850 - 19058986
Alignment:
13 tgaaaggataaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatg 112  Q
    ||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||   |||| ||||||||||||||||||| |||||| ||||| |    
19058850 tgaaaggataaaccagagggaagagaactcctaccagagctaggctcctagaccagag---acttatctcctaaacaactcttaacaaacttccttaacg 19058946  T
113 tctcaccctctaggcttcccactcttatataactgaaatt 152  Q
      |||||||||||||||||  ||||| | |||||||||||    
19058947 attcaccctctaggcttccgtctcttttttaactgaaatt 19058986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 7492218 - 7492158
Alignment:
14 gaaaggataaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaa 74  Q
    |||| ||||||| ||| |||||||||  |||||||||||||||||| ||||||||||||||    
7492218 gaaaagataaactagaattcagagaatacctaccagagctaagctcgtagaccagagagaa 7492158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 19058990 - 19059060
Alignment:
104 ttcttaatgtctcaccctctaggcttcccactcttatataactgaaattcttcctagattccagtaaatat 174  Q
    ||||||||| ||  ||||||||| ||||  |||||  |||||||||||||||||||||||||||| |||||    
19058990 ttcttaatgactagccctctaggattccttctctttaataactgaaattcttcctagattccagtgaatat 19059060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 23218993 - 23219105
Alignment:
14 gaaaggataaaccagagttcagagaactcctaccagagctaagctcctagaccagagagaacttctctcctaaacaactcttaaaaaactttcttaatgt 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | ||||||||| ||||     
23218993 gaaatgataaaccagagttcagagaactcctaccagagctaagctcctagatcagagagaacttctctcctaaacaactcatgacaaactttctgaatgc 23219092  T
114 ctcaccctctagg 126  Q
    ||||  |||||||    
23219093 ctcattctctagg 23219105  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 44672766 - 44672821
Alignment:
19 gataaaccagagttcagagaactccta-ccagagctaagctcctagaccagagaga 73  Q
    |||||||||||||||   ||||||||| ||||||||| ||||||||||||||||||    
44672766 gataaaccagagttctatgaactcctaaccagagctatgctcctagaccagagaga 44672821  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 28914400 - 28914472
Alignment:
78 ctctcctaaacaactcttaaaaaactttcttaatgtctcaccctctaggcttcccactcttatataactgaaa 150  Q
    ||||| ||||||| |||||| ||| ||||| ||||  |||||||||||||||||| |||||||||||||||||    
28914400 ctctcttaaacaattcttaataaagtttctgaatgaatcaccctctaggcttccctctcttatataactgaaa 28914472  T

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Target: scaffold0692 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 5006 - 5053
Alignment:
39 actcctaccagagctaagctcctagaccagagagaacttctctcctaa 86  Q
    |||||||||||||||| |||||||||| ||||||||| ||||| ||||    
5006 actcctaccagagctaggctcctagactagagagaacatctctgctaa 5053  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 43575487 - 43575459
Alignment:
19 gataaaccagagttcagagaactcctacc 47  Q
    |||||||||||||||||||||||||||||    
43575487 gataaaccagagttcagagaactcctacc 43575459  T

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