View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6513_low_13 (Length: 240)
Name: NF6513_low_13
Description: NF6513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6513_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 27944299 - 27944481
Alignment:
| Q |
1 |
atgaagcaacaacctagaaaaatcctaactagtatcagtttccctttaaccgtcaactaattccacatgtcatgcatctatttgttatca----ttcatt |
96 |
Q |
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| T |
27944299 |
atgaagcaacaacctagaaaaatcctaacta---tcagtttccctttaaccgtcaactaattccacgtgtcatgcatctatttgttatcactcattcatt |
27944395 |
T |
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| Q |
97 |
attatccccttttttcagtaatcgtaaccactgtataaagtctcactcagcacccaacttaacatatcataacataccatactacg |
182 |
Q |
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| T |
27944396 |
attatccccttttttcagtaatcgtaaccactatataaagactcactcagcacccaacttaacatatcataacataccatactacg |
27944481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 27435881 - 27436030
Alignment:
| Q |
94 |
attattatcccctttt-ttcagtaatcgtaaccactgtataaagtctcactcagcacccaacttaacatatcataacataccatactac--gtacgatca |
190 |
Q |
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| T |
27435881 |
attataatcccctttttttcagtaatcgtaaccactatataaagactcactcagcacccaacttaacatatcataacataccatactaccatcaagttca |
27435980 |
T |
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| Q |
191 |
agtcagaagaagaagtcatgaatcatcgtaaccaaactttcatgctgttc |
240 |
Q |
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| T |
27435981 |
agtcagaagaagaagtcatgaatcatcgtaaccaaactttcatgctgttc |
27436030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 27550579 - 27550501
Alignment:
| Q |
55 |
aactaattccacatgtcatgcatctatttgttatcattcattattatccccttttttcagtaatcgtaaccactgtataaag |
136 |
Q |
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| T |
27550579 |
aactaattccacgtgtcctgcatctatttgttatcactcattattatccctttatt---gtaatcgtaaccactatataaag |
27550501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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