View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6513_low_17 (Length: 228)

Name: NF6513_low_17
Description: NF6513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6513_low_17
NF6513_low_17
[»] chr2 (13 HSPs)
chr2 (4-222)||(2119408-2119628)
chr2 (23-173)||(28654619-28654766)
chr2 (95-185)||(31500780-31500872)
chr2 (9-87)||(26394081-26394159)
chr2 (28-87)||(19508887-19508946)
chr2 (38-86)||(13331822-13331870)
chr2 (47-87)||(37313308-37313348)
chr2 (113-165)||(19508995-19509046)
chr2 (35-87)||(31173478-31173530)
chr2 (49-86)||(19507892-19507929)
chr2 (52-88)||(33405719-33405755)
chr2 (113-165)||(34456957-34457009)
chr2 (49-85)||(37310998-37311034)
[»] chr1 (12 HSPs)
chr1 (28-185)||(31387875-31388032)
chr1 (6-171)||(27105643-27105806)
chr1 (28-176)||(4911565-4911710)
chr1 (28-124)||(42463304-42463397)
chr1 (47-166)||(18239472-18239588)
chr1 (21-84)||(22093385-22093448)
chr1 (113-176)||(33216345-33216408)
chr1 (38-87)||(36354643-36354692)
chr1 (51-87)||(39063242-39063278)
chr1 (38-87)||(7407394-7407444)
chr1 (38-87)||(48138751-48138801)
chr1 (131-185)||(42463201-42463257)
[»] chr3 (13 HSPs)
chr3 (22-185)||(23585394-23585555)
chr3 (22-185)||(23600217-23600378)
chr3 (45-187)||(45035049-45035190)
chr3 (38-87)||(48165163-48165212)
chr3 (129-194)||(18912281-18912348)
chr3 (40-87)||(18942697-18942744)
chr3 (55-176)||(48165206-48165324)
chr3 (107-191)||(177428-177514)
chr3 (113-176)||(52560293-52560356)
chr3 (113-166)||(42989824-42989877)
chr3 (131-189)||(44846952-44847012)
chr3 (47-87)||(44929361-44929402)
chr3 (113-186)||(55151333-55151408)
[»] chr5 (7 HSPs)
chr5 (55-171)||(34394133-34394246)
chr5 (28-87)||(10825429-10825488)
chr5 (21-88)||(7263270-7263337)
chr5 (54-186)||(10825305-10825436)
chr5 (47-87)||(1696624-1696664)
chr5 (96-169)||(42448951-42449025)
chr5 (47-88)||(36348662-36348703)
[»] chr8 (12 HSPs)
chr8 (30-125)||(44115599-44115691)
chr8 (34-90)||(45120654-45120710)
chr8 (59-166)||(20495488-20495591)
chr8 (21-86)||(42095480-42095545)
chr8 (35-87)||(23231232-23231284)
chr8 (113-165)||(233951-234003)
chr8 (113-165)||(710362-710414)
chr8 (113-165)||(747574-747626)
chr8 (113-165)||(871469-871521)
chr8 (131-171)||(40494103-40494143)
chr8 (128-186)||(44509972-44510029)
chr8 (129-191)||(42095405-42095469)
[»] chr7 (11 HSPs)
chr7 (38-185)||(42014510-42014656)
chr7 (22-171)||(45075224-45075370)
chr7 (47-164)||(20876274-20876388)
chr7 (38-185)||(6272448-6272593)
chr7 (47-164)||(27030551-27030662)
chr7 (130-171)||(46526067-46526108)
chr7 (113-165)||(6322581-6322633)
chr7 (38-88)||(1299001-1299052)
chr7 (47-160)||(42026944-42027054)
chr7 (90-164)||(20708230-20708304)
chr7 (113-186)||(47317790-47317865)
[»] chr6 (4 HSPs)
chr6 (38-171)||(5620689-5620819)
chr6 (52-88)||(29266932-29266968)
chr6 (45-87)||(22868342-22868385)
chr6 (52-88)||(17126976-17127012)
[»] scaffold1043 (1 HSPs)
scaffold1043 (113-185)||(2604-2678)
[»] chr4 (4 HSPs)
chr4 (21-84)||(12024601-12024664)
chr4 (21-87)||(1593742-1593808)
chr4 (51-87)||(10311505-10311541)
chr4 (47-87)||(55741407-55741447)
[»] scaffold0146 (2 HSPs)
scaffold0146 (51-87)||(24528-24564)
scaffold0146 (113-165)||(32332-32384)
[»] scaffold0184 (2 HSPs)
scaffold0184 (47-77)||(28597-28627)
scaffold0184 (129-165)||(28671-28707)
[»] scaffold0078 (2 HSPs)
scaffold0078 (47-77)||(44217-44247)
scaffold0078 (129-165)||(44137-44173)
[»] scaffold0039 (1 HSPs)
scaffold0039 (53-95)||(106850-106892)
[»] scaffold0251 (1 HSPs)
scaffold0251 (47-84)||(2014-2051)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 2119628 - 2119408
Alignment:
Q  4 tagataaccagtgatgtctgcaccggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatc 103  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || | |||||||| |    
T  2119628 tagataaccagtgatgtctgcactggtctagtttactggtatgaacggcagttaactgccgttggtgccagcggttgttaactgctgccagcgctttacc 2119529  T
Q  104 caacagttcttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttcataaatttatgtgttt 201  Q
    |||| ||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||| ||    
T  2119528 caacggttgttaactgccgctgggagcatttcaatattttacttgtgtcaatatgaagttttcattgtcagaaaatcaattttcataaatttatgtgctt 2119429  T
Q  202 tgaccctgttaatgaggataa 222  Q
    |||||||||||||||||||||    
T  2119428 tgaccctgttaatgaggataa 2119408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 28654619 - 28654766
Alignment:
Q  23 gcaccggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccg 122  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||  ||||||| ||||||||||   ||| |||||| ||||| ||| ||||||||||    
T  28654619 gcactggtctagtttactggtatgaacggcagttaactgccgctggacccagcggctgttaactgt---cggtgctttacccaacggttgttaactgccg 28654715  T
Q  123 ctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgtta 173  Q
    ||| | ||||||||||||||||||||||||||||  ||| |||||||||||    
T  28654716 ctgggggcatttcagtattttacttgtgtcaatagaaaggtttcattgtta 28654766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 31500872 - 31500780
Alignment:
Q  95 cgctttatccaacagttcttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttc 185  Q
    ||||||||||||| ||| ||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  31500872 cgctttatccaacggttgttaactgccgctgaaggcattttagtattttacttgtgtcaatatgaagttttcattgtcagaaaagcaattttc 31500780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 26394081 - 26394159
Alignment:
Q  9 aaccagtgatgtctgcaccggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 87  Q
    ||||||||  |||||||| ||||| |||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  26394081 aaccagtgcagtctgcactggtcttgtttactggtgtgaacatcagttaactgccgctggtgccagcggttgttaactg 26394159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 19508887 - 19508946
Alignment:
Q  28 ggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 87  Q
    |||||||||||||||| |||||| ||||||||||||||| || |||||||||||||||||    
T  19508887 ggtctagtttactggtgtgaacggcagttaactgccgcttgtaccagcggttgttaactg 19508946  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 13331822 - 13331870
Alignment:
Q  38 actggtatgaacgacagttaactgccgctggtgccagcggttgttaact 86  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||    
T  13331822 actggtgtgaacggcagttaactgccgctggtgccagcggttgttaact 13331870  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 37313308 - 37313348
Alignment:
Q  47 aacgacagttaactgccgctggtgccagcggttgttaactg 87  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  37313308 aacgacagttaactgccgctggagccagcggttgttaactg 37313348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 19508995 - 19509046
Alignment:
Q  113 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 165  Q
    |||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||    
T  19508995 ttaactgccgatgaga-cattttagtattttacttgtgtcaataggaagtttt 19509046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 31173530 - 31173478
Alignment:
Q  35 tttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 87  Q
    ||||||||| |||||| ||||||||||| ||||||||||| ||| ||||||||    
T  31173530 tttactggtgtgaacggcagttaactgctgctggtgccaggggtagttaactg 31173478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 19507892 - 19507929
Alignment:
Q  49 cgacagttaactgccgctggtgccagcggttgttaact 86  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  19507892 cgacagttaactgccgctggtgctagcggtagttaact 19507929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 33405755 - 33405719
Alignment:
Q  52 cagttaactgccgctggtgccagcggttgttaactgt 88  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  33405755 cagttaactgctgctggtgccaacggttgttaactgt 33405719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 34457009 - 34456957
Alignment:
Q  113 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 165  Q
    |||||| |||||||| |||||| |||||||||||||||||  ||| |||||||    
T  34457009 ttaactaccgctgagggcatttaagtattttacttgtgtctttataaagtttt 34456957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 37311034 - 37310998
Alignment:
Q  49 cgacagttaactgccgctggtgccagcggttgttaac 85  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  37311034 cgacagttaactgcggctggagccagcggttgttaac 37310998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 31387875 - 31388032
Alignment:
Q  28 ggtctagtttactggtat-gaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctga 126  Q
    ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||||||||||     
T  31387875 ggtctagtttacttgtattgaacgatagttaactgccgctggtgccagcggttgttaactgt---cggcgctttatccaacagttgttaactgccgctgg 31387971  T
Q  127 gagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttc 185  Q
      |||||| |||||||||||| |||||||||||| |||||||| |  ||||||||||||||    
T  31387972 aggcattttagtattttacttatgtcaatatgaaattttcattatcataaaagcaattttc 31388032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 171
Target Start/End: Complemental strand, 27105806 - 27105643
Alignment:
Q  6 gataaccagtgatgtctgcaccggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatcca 105  Q
    |||||||||||  | | |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||   || ||||||||||||||    
T  27105806 gataaccagtgcagacagcactggtctagtttactggtatgaacggcagttaactgccgctggtgccagcgggtgttaac---tgccggcgctttatcca 27105710  T
Q  106 acagttcttaactgccgc-tgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt 171  Q
    || ||| |||| |||||| || |  ||||| ||||||||||||||||||||||||||||||||||||    
T  27105709 acggttgttaattgccgcttggggacattttagtattttacttgtgtcaatatgaagttttcattgt 27105643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 4911710 - 4911565
Alignment:
Q  28 ggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgag 127  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||   || ||||| |||| ||||| ||| ||||| | ||||||     
T  4911710 ggtctagtttactggtatgaacgacagttaactgccgctggatccagcggatgttaac---tgccggcgttttacccaacggttgttaaccgtcgctgat 4911614  T
Q  128 agcatttcagtattttacttgtgtcaatatgaagttttcattgttaaaa 176  Q
     |||||| | |||||||||||||||||||||||||||||||||| ||||    
T  4911613 ggcattttaatattttacttgtgtcaatatgaagttttcattgtcaaaa 4911565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 42463397 - 42463304
Alignment:
Q  28 ggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgct 124  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||   |||||| |||||||||||| ||| ||||||||||||    
T  42463397 ggtctagtttactggtatgaacgacagttaactgccgctggatccagcggttgttaac---tgtcggtgctttatccaacggttgttaactgccgct 42463304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 18239588 - 18239472
Alignment:
Q  47 aacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttact 146  Q
    ||||||||||||||||||||||| |||||||||||||||   || |||||  | ||  | | ||| |||||||||| || | | |||| |||||||||||    
T  18239588 aacgacagttaactgccgctggtaccagcggttgttaac---tgccggcgtatcattgagcggttgttaactgccgttgggggtattttagtattttact 18239492  T
Q  147 tgtgtcaatatgaagttttc 166  Q
    |||||||||| |||||||||    
T  18239491 tgtgtcaataggaagttttc 18239472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 22093448 - 22093385
Alignment:
Q  21 ctgcaccggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaa 84  Q
    |||||| |||||  ||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  22093448 ctgcactggtcttatttactggtgtgaacggcagttaactgccgctggtaccagcggttgttaa 22093385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 33216408 - 33216345
Alignment:
Q  113 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgttaaaa 176  Q
    |||||| ||||||||||||||| |||||||||||||||||| | ||||||||||| ||| ||||    
T  33216408 ttaactaccgctgagagcatttaagtattttacttgtgtcattgtgaagttttcaatgtcaaaa 33216345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 36354692 - 36354643
Alignment:
Q  38 actggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 87  Q
    |||||| |||||||||||||||||||||||| | ||||||||||||||||    
T  36354692 actggtgtgaacgacagttaactgccgctggagtcagcggttgttaactg 36354643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 39063242 - 39063278
Alignment:
Q  51 acagttaactgccgctggtgccagcggttgttaactg 87  Q
    ||||||||||||||||||||||| |||||||||||||    
T  39063242 acagttaactgccgctggtgccaacggttgttaactg 39063278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 7407394 - 7407444
Alignment:
Q  38 actggtatgaacgacagttaactgccgct-ggtgccagcggttgttaactg 87  Q
    |||||| ||||| |||||||||||||||| ||| |||||||||||||||||    
T  7407394 actggtgtgaacaacagttaactgccgctaggttccagcggttgttaactg 7407444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 48138801 - 48138751
Alignment:
Q  38 actggtatgaacgacagttaactgccgctgg-tgccagcggttgttaactg 87  Q
    |||||| |||||||||||||||||||||||| | ||||||| |||||||||    
T  48138801 actggtgtgaacgacagttaactgccgctggatcccagcggatgttaactg 48138751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 42463257 - 42463201
Alignment:
Q  131 atttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttc 185  Q
    |||| ||||||||| || |||||||||||||||||||||||   |||||||||||||    
T  42463257 attttagtattttaattatgtcaatatgaagttttcattgtcagaaaagcaattttc 42463201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 23585394 - 23585555
Alignment:
Q  22 tgcaccggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgcc 121  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||| |  |||||||||||||||   ||||| ||||||| ||||||||| |||||||||    
T  23585394 tgcactggtctagtttactggtattaacggcagttaactgccgcttgatccagcggttgttaac---tgtcgacgctttacccaacagttgttaactgcc 23585490  T
Q  122 gctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttc 185  Q
    | || | |||||| | |||||||||||| |||||||||| ||||| ||||   |||||||||||||    
T  23585491 gttg-gggcattttaatattttacttgtctcaatatgaaattttctttgtcagaaaagcaattttc 23585555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 185
Target Start/End: Original strand, 23600217 - 23600378
Alignment:
Q  22 tgcaccggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgcc 121  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||| |  |||||||||||||||   ||||| ||||||| ||||||||| |||||||||    
T  23600217 tgcactggtctagtttactggtattaacggcagttaactgccgcttgatccagcggttgttaac---tgtcgacgctttacccaacagttgttaactgcc 23600313  T
Q  122 gctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttc 185  Q
    | || | |||||| | |||||||||||| |||||||||| ||||| ||||   |||||||||||||    
T  23600314 gttg-gggcattttaatattttacttgtctcaatatgaaattttctttgtcagaaaagcaattttc 23600378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 187
Target Start/End: Original strand, 45035049 - 45035190
Alignment:
Q  45 tgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtatttta 144  Q
    |||||| |||||||||| ||||||||||||||||||||||||||   |||||  | ||  ||| ||| |||| |||||||| |  |||||  ||||||||    
T  45035049 tgaacggcagttaactggcgctggtgccagcggttgttaactgt---cggcgtatcattgaacggttgttaattgccgctggggacatttacgtatttta 45035145  T
Q  145 cttgtgtcaatatgaagttttcattgtt--aaaagcaattttcat 187  Q
    |||||||||||| |||||||||||||||  ||||| |||||||||    
T  45035146 cttgtgtcaataggaagttttcattgttagaaaagtaattttcat 45035190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 48165163 - 48165212
Alignment:
Q  38 actggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 87  Q
    ||||||||||||| ||||||||||||||||||| |||||||| |||||||    
T  48165163 actggtatgaacggcagttaactgccgctggtgtcagcggttattaactg 48165212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 18912281 - 18912348
Alignment:
Q  129 gcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttcataaattta 194  Q
    |||||| ||||||||||||||||||||||||| |||||| |||   |||||||||||||| |||||||    
T  18912281 gcattttagtattttacttgtgtcaatatgaaattttcactgtcagaaaagcaattttcacaaattta 18912348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 18942744 - 18942697
Alignment:
Q  40 tggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 87  Q
    |||||||||||  |||||||| ||||||||||||||||||||||||||    
T  18942744 tggtatgaacggtagttaacttccgctggtgccagcggttgttaactg 18942697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 176
Target Start/End: Original strand, 48165206 - 48165324
Alignment:
Q  55 ttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttacttgtgtcaa 154  Q
    |||||||||||||||||||||||||||||||   |||||||   | ||  ||| ||| |||||||||| ||   ||||||  ||||||||||| ||||||    
T  48165206 ttaactgccgctggtgccagcggttgttaac---tgtcggccaatcatttaacggttgttaactgccgttggaggcatttacgtattttacttatgtcaa 48165302  T
Q  155 tatgaagttttcattgttaaaa 176  Q
    || |||| ||||||||| ||||    
T  48165303 taggaagatttcattgtcaaaa 48165324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 191
Target Start/End: Complemental strand, 177514 - 177428
Alignment:
Q  107 cagttcttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgtt--aaaagcaattttcataaat 191  Q
    ||||| |||||||||  ||  ||||||| |||||||||||| |||||||| |||||||| || |||  |||||||||||||| ||||    
T  177514 cagttgttaactgccaatggaagcattttagtattttacttatgtcaataggaagttttgatggttagaaaagcaattttcagaaat 177428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 52560356 - 52560293
Alignment:
Q  113 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgttaaaa 176  Q
    |||||||||||||   ||||||  |||||||||||||||||||| |||| ||||||||| ||||    
T  52560356 ttaactgccgctggaggcatttacgtattttacttgtgtcaataggaaggtttcattgtcaaaa 52560293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 42989877 - 42989824
Alignment:
Q  113 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttc 166  Q
    |||||| ||||||| || |||| | ||||||| |||||||||||||||||||||    
T  42989877 ttaactaccgctgaaagtatttaaatattttagttgtgtcaatatgaagttttc 42989824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 44847012 - 44846952
Alignment:
Q  131 atttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttcataa 189  Q
    |||| |||||||||||||||| ||| ||||||||||| |||   |||||||||||||||||    
T  44847012 atttaagtattttacttgtgttaatgtgaagttttcaatgtcagaaaagcaattttcataa 44846952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 44929361 - 44929402
Alignment:
Q  47 aacgacagttaactgccgctgg-tgccagcggttgttaactg 87  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  44929361 aacgacagttaactgccgctggcttccagcggttgttaactg 44929402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 55151333 - 55151408
Alignment:
Q  113 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttca 186  Q
    ||||||||||||| ||||||||  ||||||||| |||||||||  ||| |||||| |||   ||||||||||||||    
T  55151333 ttaactgccgctgggagcatttaggtattttacctgtgtcaattggaacttttcaatgtcagaaaagcaattttca 55151408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 34394133 - 34394246
Alignment:
Q  55 ttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttacttgtgtcaa 154  Q
    ||||||||||||||||||||||||||||||||| ||   |||||||| ||||| ||| ||||||| ||||| |  ||||| | |||||||||||||||||    
T  34394133 ttaactgccgctggtgccagcggttgttaactgatg---gcgctttacccaacggttgttaactgtcgctggggacattttattattttacttgtgtcaa 34394229  T
Q  155 tatgaagttttcattgt 171  Q
    |||||||||||||||||    
T  34394230 tatgaagttttcattgt 34394246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 10825488 - 10825429
Alignment:
Q  28 ggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 87  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10825488 ggtctagtttactggtatgaacgacagttaactgccgctgatgccagcggttgttaactg 10825429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 7263270 - 7263337
Alignment:
Q  21 ctgcaccggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgt 88  Q
    |||||| ||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  7263270 ctgcactggtcttgtttactggtgtgaacggcagttaactgccgctggtgccagcggttgttaactgt 7263337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 10825436 - 10825305
Alignment:
Q  54 gttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttacttgtgtca 153  Q
    |||||||||||||||  |||||||||||| ||||    |||||||||| |||||  || || ||| || ||  | |||||| ||||||||||||||||||    
T  10825436 gttaactgccgctggatccagcggttgttgactgc---cggcgctttacccaacgattgttcacttccactaggggcattttagtattttacttgtgtca 10825340  T
Q  154 atatgaagttttcattgt--taaaagcaattttca 186  Q
    ||||||||||||||||||  |||||||||||||||    
T  10825339 atatgaagttttcattgtcataaaagcaattttca 10825305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 1696624 - 1696664
Alignment:
Q  47 aacgacagttaactgccgctggtgccagcggttgttaactg 87  Q
    ||||||| |||||||||||||| ||||||||||||||||||    
T  1696624 aacgacatttaactgccgctggagccagcggttgttaactg 1696664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 42449025 - 42448951
Alignment:
Q  96 gctttatccaacagttcttaactgccgctgagagcatttcagtatttt-acttgtgtcaatatgaagttttcatt 169  Q
    |||||||||||| ||| |||||||||| | ||  ||||| | |||||| ||||||||||||||||| ||||||||    
T  42449025 gctttatccaacggttgttaactgccgttaaggacattttaatatttttacttgtgtcaatatgaaattttcatt 42448951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 36348703 - 36348662
Alignment:
Q  47 aacgacagttaactgccgctggtgccagcggttgttaactgt 88  Q
    |||||||||||||||||||| | ||||| |||||||||||||    
T  36348703 aacgacagttaactgccgctagagccaggggttgttaactgt 36348662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 44115691 - 44115599
Alignment:
Q  30 tctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctg 125  Q
    |||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||||   || |||||||||| ||||||||| |||||||||||||    
T  44115691 tctagtttaccggtatgaacggcagttaactaccgttggtgccagcggttgttaac---tgccggcgctttacccaacagttgttaactgccgctg 44115599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 45120654 - 45120710
Alignment:
Q  34 gtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttg 90  Q
    |||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||    
T  45120654 gtttactggtgtgaacggcagttaactgccgctggtgccagcggctgttaactgttg 45120710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 20495488 - 20495591
Alignment:
Q  59 ctgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttacttgtgtcaatatg 158  Q
    |||||||||||||||||||||||||||   ||||||||  | ||  | || || ||||||||||| | |||||| | ||||||||||||||||||||| |    
T  20495488 ctgccgctggtgccagcggttgttaac---tgtcggcgtatcattgagcaattgttaactgccgc-gggagcatgttagtattttacttgtgtcaatacg 20495583  T
Q  159 aagttttc 166  Q
    ||||||||    
T  20495584 aagttttc 20495591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 42095545 - 42095480
Alignment:
Q  21 ctgcaccggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaact 86  Q
    |||||| ||||| ||||||| || |||||| |||||||||| | ||||||||||||||||||||||    
T  42095545 ctgcactggtcttgtttactagtgtgaacggcagttaactgtcactggtgccagcggttgttaact 42095480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 23231232 - 23231284
Alignment:
Q  35 tttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 87  Q
    |||||| || |||||||||||| |||||||||||||||||||||||| |||||    
T  23231232 tttactagtgtgaacgacagtttactgccgctggtgccagcggttgtcaactg 23231284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 234003 - 233951
Alignment:
Q  113 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 165  Q
    |||||| ||||| ||||||||| |||||||||||||||||| | |||||||||    
T  234003 ttaactaccgctaagagcatttaagtattttacttgtgtcattctgaagtttt 233951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 710414 - 710362
Alignment:
Q  113 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 165  Q
    |||||| ||||| ||||||||| |||||||||||||||||| | |||||||||    
T  710414 ttaactaccgctaagagcatttaagtattttacttgtgtcattctgaagtttt 710362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 747626 - 747574
Alignment:
Q  113 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 165  Q
    |||||| ||||| ||||||||| |||||||||||||||||| | |||||||||    
T  747626 ttaactaccgctaagagcatttaagtattttacttgtgtcattctgaagtttt 747574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 871521 - 871469
Alignment:
Q  113 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 165  Q
    |||||| ||||| ||||||||| |||||||||||||||||| | |||||||||    
T  871521 ttaactaccgctaagagcatttaagtattttacttgtgtcattctgaagtttt 871469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 40494103 - 40494143
Alignment:
Q  131 atttcagtattttacttgtgtcaatatgaagttttcattgt 171  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  40494103 atttaagtattttacttgtgtcaataggaagttttcattgt 40494143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 44509972 - 44510029
Alignment:
Q  128 agcatttcagtattttacttgtgtcaatatgaagttttcattgttaaaagcaattttca 186  Q
    |||||||  |||||||| ||||||||||||||||||||||| | || ||||||||||||    
T  44509972 agcatttacgtattttatttgtgtcaatatgaagttttcatcg-tagaagcaattttca 44510029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 42095469 - 42095405
Alignment:
Q  129 gcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttcataaat 191  Q
    |||||| |||||||||||||||||||||  || ||||||||||  ||||| |||||||| |||||    
T  42095469 gcattttagtattttacttgtgtcaatagaaaattttcattgtcataaaatcaattttcttaaat 42095405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 42014510 - 42014656
Alignment:
Q  38 actggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcag 137  Q
    |||||| ||||||||||||||||||| ||||||||| ||||||||||    ||||||||  | ||  ||||||| ||||||||| ||| | ||||||  |    
T  42014510 actggtgtgaacgacagttaactgccactggtgccaacggttgttaa---atgtcggcgtatcattgaacagttgttaactgccactgggggcatttacg 42014606  T
Q  138 tattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttc 185  Q
    |||||||||||||||||||  || ||||||||||   |||||||||||||    
T  42014607 tattttacttgtgtcaatagaaatttttcattgtcagaaaagcaattttc 42014656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 45075370 - 45075224
Alignment:
Q  22 tgcaccggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgcc 121  Q
    ||||| ||||| ||||| |||| |||||| |||||||| | ||||||| |||||||||||| ||||    |||||  | ||  | | ||| |||||||||    
T  45075370 tgcactggtcttgtttattggtgtgaacggcagttaacagtcgctggtaccagcggttgttcactga---cggcgtatcatagagcggttgttaactgcc 45075274  T
Q  122 gctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt 171  Q
    |||| | |||||| ||||||||||||||||||||| ||||||||||||||    
T  45075273 gctgggggcattttagtattttacttgtgtcaataggaagttttcattgt 45075224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 20876388 - 20876274
Alignment:
Q  47 aacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttact 146  Q
    |||| |||||||||||||||||  ||||||||||||||| ||   ||||||||   ||||||||| |||||  |||||| | |||||| |||||||||||    
T  20876388 aacggcagttaactgccgctggatccagcggttgttaacagt---cggcgcttagcccaacagttgttaacaaccgctgggggcattttagtattttact 20876292  T
Q  147 tgtgtcaatatgaagttt 164  Q
    ||||||| | ||||||||    
T  20876291 tgtgtcattgtgaagttt 20876274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 185
Target Start/End: Complemental strand, 6272593 - 6272448
Alignment:
Q  38 actggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcag 137  Q
    |||||| |||| |||||||||||||||||||||||||||| |||||||||  | ||   | ||    | | ||| ||||| ||||| | | |||||| ||    
T  6272593 actggtgtgaatgacagttaactgccgctggtgccagcgggtgttaactgcaggcgtaacattg---agcggttgttaacggccgcaggg-gcattttag 6272498  T
Q  138 tattttacttgtgtcaatatgaagttttcattgtt--aaaagcaattttc 185  Q
    ||||||| |||||||||||||||||||||||||||  |||||||||||||    
T  6272497 tattttatttgtgtcaatatgaagttttcattgttagaaaagcaattttc 6272448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 164
Target Start/End: Original strand, 27030551 - 27030662
Alignment:
Q  47 aacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttact 146  Q
    |||| ||||||||||||||||| ||||||||||||||||    | || ||||| | ||||| ||| ||||   ||| |||| |||||| |||||||||||    
T  27030551 aacggcagttaactgccgctggagccagcggttgttaac---agccgccgcttaacccaacggttgttaa---ccgttgagggcatttaagtattttact 27030644  T
Q  147 tgtgtcaatatgaagttt 164  Q
    | ||||||| ||||||||    
T  27030645 tatgtcaatgtgaagttt 27030662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 46526108 - 46526067
Alignment:
Q  130 catttcagtattttacttgtgtcaatatgaagttttcattgt 171  Q
    ||||| ||||||||||||||||| ||||||||||||||||||    
T  46526108 cattttagtattttacttgtgtcgatatgaagttttcattgt 46526067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 6322581 - 6322633
Alignment:
Q  113 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 165  Q
    ||||||||||||||| |||||| | |||||||||||||| |||| ||||||||    
T  6322581 ttaactgccgctgagggcattttaatattttacttgtgttaataggaagtttt 6322633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 1299001 - 1299052
Alignment:
Q  38 actggtatgaacgacagttaactgccgct-ggtgccagcggttgttaactgt 88  Q
    |||||| |||||| ||||||||||||||| ||| ||||||||||||||||||    
T  1299001 actggtgtgaacggcagttaactgccgctaggttccagcggttgttaactgt 1299052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 160
Target Start/End: Original strand, 42026944 - 42027054
Alignment:
Q  47 aacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttact 146  Q
    |||||||||||||||||| ||| ||||||||||||||||    | || ||||| | |||||  || |||||  ||||| | ||||||| | |||||||||    
T  42026944 aacgacagttaactgccgttggagccagcggttgttaac---agccgccgcttaacccaacgattgttaacaaccgcttaaagcatttaaatattttact 42027040  T
Q  147 tgtgtcaatatgaa 160  Q
    ||||||| ||||||    
T  42027041 tgtgtcattatgaa 42027054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 20708304 - 20708230
Alignment:
Q  90 gtcggcgctttatccaacagttcttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttt 164  Q
    ||||||||||   ||||||||| |||||  |||||| | |||||| |||||||||||||||||| | ||||||||    
T  20708304 gtcggcgcttagcccaacagttgttaacaaccgctgggggcattttagtattttacttgtgtcattgtgaagttt 20708230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 47317790 - 47317865
Alignment:
Q  113 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttca 186  Q
    |||||| |||||| | |||||| |||||||||||||||||| | | ||||||||| |||   ||||||||||||||    
T  47317790 ttaactaccgctgggggcatttaagtattttacttgtgtcattgtaaagttttcaatgtcagaaaagcaattttca 47317865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 5620689 - 5620819
Alignment:
Q  38 actggtatgaacgacagttaactgccgctggtgccagcggttgttaactgttgtcggcgctttatccaacagttcttaactgccgctgagagcatttcag 137  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||||||   || || ||  | ||  ||| ||| ||||||||||||| | ||||||  |    
T  5620689 actggtgtgaacaacagtcaactgccgctggtgccagcggttgttaac---tgccgacgtatcattgaacggttgttaactgccgctgggggcatttacg 5620785  T
Q  138 tattttacttgtgtcaatatgaagttttcattgt 171  Q
    || |||||||||||||||| ||||||||||||||    
T  5620786 tagtttacttgtgtcaataggaagttttcattgt 5620819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 29266932 - 29266968
Alignment:
Q  52 cagttaactgccgctggtgccagcggttgttaactgt 88  Q
    ||||||||||||||||| |||||||||||||||||||    
T  29266932 cagttaactgccgctggagccagcggttgttaactgt 29266968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 22868342 - 22868385
Alignment:
Q  45 tgaacgacagttaactgccgct-ggtgccagcggttgttaactg 87  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  22868342 tgaacgacagttaactgccgctgggttccagcggttgttaactg 22868385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 17127012 - 17126976
Alignment:
Q  52 cagttaactgccgctggtgccagcggttgttaactgt 88  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  17127012 cagttaactgccgctggtgtcagcggtagttaactgt 17126976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 113 - 185
Target Start/End: Complemental strand, 2678 - 2604
Alignment:
Q  113 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagttttcattgt--taaaagcaattttc 185  Q
    |||||||||||||||  ||||| ||||||||||||||||||||| |||||| |||||||   |||||||||||||    
T  2678 ttaactgccgctgaggacattttagtattttacttgtgtcaataggaagttgtcattgtcagaaaagcaattttc 2604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 12024664 - 12024601
Alignment:
Q  21 ctgcaccggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaa 84  Q
    |||||| ||||| |||||||||| |||| | |||||||||||||||||||||||||| ||||||    
T  12024664 ctgcactggtcttgtttactggtgtgaatggcagttaactgccgctggtgccagcgggtgttaa 12024601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 1593742 - 1593808
Alignment:
Q  21 ctgcaccggtctagtttactggtatgaacgacagttaactgccgctggtgccagcggttgttaactg 87  Q
    |||||| ||||| |||||||||| |||||| |||||||||||| |||||||||  | ||||||||||    
T  1593742 ctgcactggtcttgtttactggtgtgaacggcagttaactgccactggtgccaatgattgttaactg 1593808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 10311505 - 10311541
Alignment:
Q  51 acagttaactgccgctggtgccagcggttgttaactg 87  Q
    |||||||||||||||||||| |||||||| |||||||    
T  10311505 acagttaactgccgctggtgacagcggttattaactg 10311541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 55741407 - 55741447
Alignment:
Q  47 aacgacagttaactgccgctggtgccagcggttgttaactg 87  Q
    |||||||||||||||||||||| ||||||||  ||||||||    
T  55741407 aacgacagttaactgccgctggagccagcggcagttaactg 55741447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 24528 - 24564
Alignment:
Q  51 acagttaactgccgctggtgccagcggttgttaactg 87  Q
    |||||||||||||||||||||||||||| ||||||||    
T  24528 acagttaactgccgctggtgccagcggtagttaactg 24564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 32332 - 32384
Alignment:
Q  113 ttaactgccgctgagagcatttcagtattttacttgtgtcaatatgaagtttt 165  Q
    |||||| |||||| | |||||| |||||||||||||||||| | |||||||||    
T  32332 ttaactaccgctgggggcatttaagtattttacttgtgtcattgtgaagtttt 32384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 77
Target Start/End: Original strand, 28597 - 28627
Alignment:
Q  47 aacgacagttaactgccgctggtgccagcgg 77  Q
    |||||||||||||||||||||||||||||||    
T  28597 aacgacagttaactgccgctggtgccagcgg 28627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 28671 - 28707
Alignment:
Q  129 gcatttcagtattttacttgtgtcaatatgaagtttt 165  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  28671 gcattttagtattttacttgtgtcaatatgaaatttt 28707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 77
Target Start/End: Complemental strand, 44247 - 44217
Alignment:
Q  47 aacgacagttaactgccgctggtgccagcgg 77  Q
    |||||||||||||||||||||||||||||||    
T  44247 aacgacagttaactgccgctggtgccagcgg 44217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 44173 - 44137
Alignment:
Q  129 gcatttcagtattttacttgtgtcaatatgaagtttt 165  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  44173 gcattttagtattttacttgtgtcaatatgaaatttt 44137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 106892 - 106850
Alignment:
Q  53 agttaactgccgctggtgccagcggttgttaactgttgtcggc 95  Q
    |||||||| ||||||||||||||||  ||||||||||||||||    
T  106892 agttaactaccgctggtgccagcggcagttaactgttgtcggc 106850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 2014 - 2051
Alignment:
Q  47 aacgacagttaactgccgctggtgccagcggttgttaa 84  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  2014 aacgacacttaactgccgctggtgctagcggttgttaa 2051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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