View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6513_low_18 (Length: 212)
Name: NF6513_low_18
Description: NF6513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6513_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 15239195 - 15239012
Alignment:
| Q |
13 |
ggagcagagattcaatcttgatcatggcgtacgacgtagcatttttggtaatttatggataatgtttgagtcttttaattaacattttctatactttaaa |
112 |
Q |
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| T |
15239195 |
ggagccgagattcaatcttgatcatggcgtacgccgtagcatttttggtaatttatggataatgtttgagtcttttaattaacattttctatactttaaa |
15239096 |
T |
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| Q |
113 |
atataactataaacttactgaaagttaagttggcagagtagctacaagatctgcatcccatgataggctcatgcatgaaaattg |
196 |
Q |
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| T |
15239095 |
agattactataaacttactgaaagttaagttggcaaagcagctacaagatctgcatcccatgataggctcatgcatgaaaattg |
15239012 |
T |
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