View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6514_high_10 (Length: 369)
Name: NF6514_high_10
Description: NF6514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6514_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 29 - 353
Target Start/End: Original strand, 6592908 - 6593234
Alignment:
| Q |
29 |
aacacaattaattattcctctgaatttaaattacaaaatgatatagttcgaaagtttatgtctattatataatggcattactttg--tgaaaactattga |
126 |
Q |
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| T |
6592908 |
aacacaattaattattcctctgaatttaaattacaaaatgatatagttcgaaagtttatgtctattatataacggcattactttgcatgaaaactattga |
6593007 |
T |
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| Q |
127 |
ccagggtggtgggttgcaattaaaaagtgtcataaaaacaacagttctaaaataacataatactatttagttgattagaggataaacaattcctcttcaa |
226 |
Q |
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| T |
6593008 |
ccagggtggtgggttgcaattaaaaagtgtcaaaaaaacaacggttctaaaataacataatactatttagttgattagaggataaacaattcctcttcaa |
6593107 |
T |
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| Q |
227 |
taagacgttgttggcgagaggagtatgaatctactctcgagttggcataacgcacagacatgctgaaataatgcagcggcacagcaacatgttgtcaatc |
326 |
Q |
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| T |
6593108 |
taagacgttgtcggcgagaggagtatgaatctactctcgagttggcataacacaaagacatgctgaaataatgcagtggcacagcaacaagttgtcaatc |
6593207 |
T |
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| Q |
327 |
acatatggaagaaaccgagctacaagt |
353 |
Q |
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| T |
6593208 |
acatatggaagaaaccgagctacaagt |
6593234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 6904165 - 6904214
Alignment:
| Q |
240 |
gcgagaggagtatgaatctactctcgagttggcataacgcacagacatgc |
289 |
Q |
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| T |
6904165 |
gcgagaggggttagaatctactctcgagttggcataacgcgcagacatgc |
6904214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 344
Target Start/End: Complemental strand, 5444496 - 5444403
Alignment:
| Q |
254 |
aatctactctcgagttggcataacgcacagacatgctgaaataatgcagcggcacagcaacat---gttgtcaatcacatatggaagaaaccga |
344 |
Q |
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| T |
5444496 |
aatctactctcaagttggcataacgcgcatacatgtcgcaataatgcggcgaaacaacaacagaaagttgtcaatcacagatggaagaaaccga |
5444403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 344
Target Start/End: Complemental strand, 5453540 - 5453447
Alignment:
| Q |
254 |
aatctactctcgagttggcataacgcacagacatgctgaaataatgcagcggcacagcaacat---gttgtcaatcacatatggaagaaaccga |
344 |
Q |
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| T |
5453540 |
aatctactctcaagttggcataacgcgcatacatgtcgcaataatgcggcgaaacaacaacagaaagttgtcaatcacagatggaagaaaccga |
5453447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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