View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6514_high_7 (Length: 447)

Name: NF6514_high_7
Description: NF6514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6514_high_7
NF6514_high_7
[»] chr1 (4 HSPs)
chr1 (1-431)||(4366823-4367238)
chr1 (3-158)||(17561085-17561241)
chr1 (12-61)||(39379409-39379458)
chr1 (231-275)||(39379601-39379645)
[»] chr7 (19 HSPs)
chr7 (12-165)||(29431340-29431496)
chr7 (3-165)||(29454436-29454601)
chr7 (220-326)||(29873918-29874024)
chr7 (2-158)||(29898953-29899109)
chr7 (28-87)||(29859101-29859160)
chr7 (9-165)||(29895044-29895197)
chr7 (102-166)||(29922425-29922489)
chr7 (231-326)||(29858859-29858954)
chr7 (231-276)||(29894951-29894996)
chr7 (2-50)||(29884953-29885001)
chr7 (231-290)||(29106273-29106332)
chr7 (231-276)||(29074552-29074597)
chr7 (231-290)||(29898833-29898892)
chr7 (24-61)||(15572249-15572286)
chr7 (15-59)||(19637571-19637615)
chr7 (21-61)||(22021065-22021105)
chr7 (114-158)||(22088208-22088252)
chr7 (7-71)||(29445984-29446048)
chr7 (231-263)||(29884761-29884793)
[»] chr4 (2 HSPs)
chr4 (11-59)||(3561305-3561353)
chr4 (231-281)||(11849206-11849256)
[»] chr2 (2 HSPs)
chr2 (16-58)||(18921079-18921121)
chr2 (16-56)||(18909152-18909192)


Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 4366823 - 4367238
Alignment:
Q  1 aagtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgatttggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4366823 aagtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgatttggat 4366922  T
Q  101 ggtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaattgccatgatagctgaaagtttcaggtggagagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  4366923 ggtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaattgccatgatagctgaaagtttcag---------- 4367012  T
Q  201 tcgaaaatcttgaaaacgaccaaatatcgcagatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcggtcacagaataa 300  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367013 -----aatcttgaaaacgaccaaatatcgcagatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcggtcacagaataa 4367107  T
Q  301 tcactcaaacagatcaatccattgcatgtgccaaccatacgatagcaatctttgttgaccaaatgatagtaagggtcgatggaaaaggtgaatgacggat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4367108 tcactcaaacagatcaatccattgcatgtgccaaccatacgatagcaatctttgttgaccaaatgatagtaagggtcgatggaaaaggtgaatgacggat 4367207  T
Q  401 tctcaattaaatggtgcatggagtaaggaac 431  Q
    |||||||||||||||||||||||||||||||    
T  4367208 tctcaattaaatggtgcatggagtaaggaac 4367238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 17561085 - 17561241
Alignment:
Q  3 gtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacactt-agaatcctcacaatgcttctctgttgatttggatg 101  Q
    |||||||| |||||||||||  || ||||||| |||||||||||||||||||||||||| |||| | ||| |||||| |||| |||  ||||  |||||     
T  17561085 gtccaaatcaagaggaacaaccgggaaactttgaatatctctccaaacgttatcacccaaacttaaaaattctcacattgctactcctttgacatggatt 17561184  T
Q  102 gtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaa 158  Q
    |||||| ||  |||| ||||||||| | || || ||| | ||||||||||| |||||    
T  17561185 gtaacgtgaagccactaccttataaatgtcggtggaagtatcacaaccaaagttgaa 17561241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 39379409 - 39379458
Alignment:
Q  12 aagaggaacaataggaaaactttcaatatctctccaaacgttatcaccca 61  Q
    |||||||||||  || ||||||||||||| ||||||||| ||||||||||    
T  39379409 aagaggaacaaccgggaaactttcaatatttctccaaacattatcaccca 39379458  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 39379601 - 39379645
Alignment:
Q  231 agatgttgtcctggttgctgggttccataaacgaaaccagtactc 275  Q
    ||||||| |||| || ||||||||||||||||| |||||||||||    
T  39379601 agatgttttcctagtggctgggttccataaacggaaccagtactc 39379645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 12 - 165
Target Start/End: Original strand, 29431340 - 29431496
Alignment:
Q  12 aagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttga---tttggatggtaacgg 108  Q
    ||||||||||| ||| ||||||||||||||||||||||| ||||||| || ||||| |||  | ||| |||||||| ||| |   ||||||| |||||||    
T  29431340 aagaggaacaacagggaaactttcaatatctctccaaacattatcactcaaacttaaaattttgacattgcttctcagttcatcttttggattgtaacgg 29431439  T
Q  109 gacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaa 165  Q
    ||| |||||||||||||||| || |||| ||||||| ||||||| || || ||||||    
T  29431440 gacgccaccaccttataagtgtcggttgcattgtcaaaaccaaagttaaacttgaaa 29431496  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 165
Target Start/End: Original strand, 29454436 - 29454601
Alignment:
Q  3 gtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttct---ctgttgatttgga 99  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||  || |||||||||  | ||| |||||||    || || | ||||    
T  29454436 gtccaaatgaagaggagcaacagggaaactttcaatatctctccaaacattatcatgcaaacttagaattttgacattgcttctgcagtgatgttctgga 29454535  T
Q  100 tggtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaa 165  Q
    | |||||||||| ||||| | || || |||||||||||||||||| | ||||| ||||| ||||||    
T  29454536 tcgtaacgggacgccaccgctttctaggtatcagttgaattgtcatagccaaagttgaacttgaaa 29454601  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 220 - 326
Target Start/End: Complemental strand, 29874024 - 29873918
Alignment:
Q  220 ccaaatatcgcagatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcggtcacagaataatcactcaaacagatcaatc 319  Q
    |||||||| | ||||||| ||||||| |||||||||||||||| || |||||||||| ||| ||||| ||| |  ||| ||||| |||||||||||||||    
T  29874024 ccaaatattggagatgttatcctggtggctgggttccataaacaaagccagtactctttatcttcataggtgaaggaacaatcagtcaaacagatcaatc 29873925  T
Q  320 cattgca 326  Q
    |||||||    
T  29873924 cattgca 29873918  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 29899109 - 29898953
Alignment:
Q  2 agtccaaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgatttggatg 101  Q
    ||||| |||||||||||||||  || ||||||||||||||||||||||| |||||||| | ||| |||||  ||||| ||||||||  | ||  |||||     
T  29899109 agtccgaatgaagaggaacaactgggaaactttcaatatctctccaaacattatcaccaaaactgagaattttcacattgcttctcaatcgaactggatt 29899010  T
Q  102 gtaacgggacaccaccaccttataagtatcag-ttgaattgtcacaaccaaacttgaa 158  Q
    ||||||| |  |||||||||||||||| || | ||||||||||| ||||||| |||||    
T  29899009 gtaacggtatgccaccaccttataagt-tctgtttgaattgtcaaaaccaaatttgaa 29898953  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 29859160 - 29859101
Alignment:
Q  28 aaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctc 87  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  29859160 aaactttcaatatctctccaaacgttatcacccaaacttagaattctcacattgcttctc 29859101  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 29895197 - 29895044
Alignment:
Q  9 atgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaatcctcacaatgcttctctgttgatttggatggtaacgg 108  Q
    ||||||||| |||  ||| |||||||||||||||||||||| |||   ||||||| ||||||| || ||||||||||||| || |  ||||| | |||      
T  29895197 atgaagagggacagcagggaaactttcaatatctctccaaaagtt---acccacagttagaattctgacaatgcttctcttttcaagtggattgcaacaa 29895101  T
Q  109 gacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaa 165  Q
     || ||||||||||||||||  | |||||||||||| |||||||| |||| ||||||    
T  29895100 tacgccaccaccttataagtgccggttgaattgtcataaccaaacctgaacttgaaa 29895044  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 29922425 - 29922489
Alignment:
Q  102 gtaacgggacaccaccaccttataagtatcagttgaattgtcacaaccaaacttgaagttgaaat 166  Q
    ||||||| || ||| |||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  29922425 gtaacggaacgccaacaccttataagtatcagttgaattgtcaaaaccaaatttgaaattgaaat 29922489  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 29858954 - 29858859
Alignment:
Q  231 agatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcggtcacagaataatcactcaaacagatcaatccattgca 326  Q
    |||||||||||| || ||||||||||||||||| |||||||| |||| ||| ||| || | | ||||| |||| ||||||| ||||| ||||||||    
T  29858954 agatgttgtccttgtggctgggttccataaacggaaccagtaatctcgatactcaccgttgaaagaatcatcagtcaaacaaatcaacccattgca 29858859  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 29894996 - 29894951
Alignment:
Q  231 agatgttgtcctggttgctgggttccataaacgaaaccagtactct 276  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  29894996 agatgttgtcctggtggctgggttcgataaacgaaaccagtactct 29894951  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 29885001 - 29884953
Alignment:
Q  2 agtccaaatgaagaggaacaataggaaaactttcaatatctctccaaac 50  Q
    |||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  29885001 agtccagatgaagaggaacaactggaaaactttcaatatctctccaaac 29884953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 29106332 - 29106273
Alignment:
Q  231 agatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcggt 290  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||| |||| || |||||    
T  29106332 agatgttgtcctggtggctgggttccataaacggagccagtactctatataatcgtcggt 29106273  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 29074597 - 29074552
Alignment:
Q  231 agatgttgtcctggttgctgggttccataaacgaaaccagtactct 276  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||||    
T  29074597 agatgttgtcctggtggctgggttccataaacggagccagtactct 29074552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 29898892 - 29898833
Alignment:
Q  231 agatgttgtcctggttgctgggttccataaacgaaaccagtactctctatattcatcggt 290  Q
    ||||||||||||||| ||||||||||||||||| |   ||||||||  ||||||||||||    
T  29898892 agatgttgtcctggtggctgggttccataaacggagatagtactctagatattcatcggt 29898833  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 15572249 - 15572286
Alignment:
Q  24 aggaaaactttcaatatctctccaaacgttatcaccca 61  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  15572249 aggaaaacaatcaatatctctccaaacgttatcaccca 15572286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 19637571 - 19637615
Alignment:
Q  15 aggaacaataggaaaactttcaatatctctccaaacgttatcacc 59  Q
    |||||| ||||||||||||| ||||| ||||||||| ||||||||    
T  19637571 aggaaccataggaaaactttgaatatttctccaaactttatcacc 19637615  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 22021105 - 22021065
Alignment:
Q  21 aataggaaaactttcaatatctctccaaacgttatcaccca 61  Q
    |||||||||||||||||||| ||||||||| ||||| ||||    
T  22021105 aataggaaaactttcaatatttctccaaacattatcgccca 22021065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 22088252 - 22088208
Alignment:
Q  114 caccaccttataagtatcagttgaattgtcacaaccaaacttgaa 158  Q
    ||||||||||||||| || |||||||| ||| |||||||||||||    
T  22088252 caccaccttataagtttctgttgaattatcataaccaaacttgaa 22088208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 29445984 - 29446048
Alignment:
Q  7 aaatgaagaggaacaataggaaaactttcaatatctctccaaacgttatcacccacacttagaat 71  Q
    ||||||||||||||||  || ||||||| ||| | ||||||||| |||||||| | |||||||||    
T  29445984 aaatgaagaggaacaacggggaaactttgaatctgtctccaaacattatcacctatacttagaat 29446048  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 29884793 - 29884761
Alignment:
Q  231 agatgttgtcctggttgctgggttccataaacg 263  Q
    ||||||||||||||| |||||||||||||||||    
T  29884793 agatgttgtcctggtggctgggttccataaacg 29884761  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 3561305 - 3561353
Alignment:
Q  11 gaagaggaacaataggaaaactttcaatatctctccaaacgttatcacc 59  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  3561305 gaagaggaacaataggaaaactttcaatatttctccaaacattatcacc 3561353  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 11849206 - 11849256
Alignment:
Q  231 agatgttgtcctggttgctgggttccataaacgaaaccagtactctctata 281  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||| ||||    
T  11849206 agatgttgtcctggtggctgggttccataaacggagccagtactctgtata 11849256  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 18921079 - 18921121
Alignment:
Q  16 ggaacaataggaaaactttcaatatctctccaaacgttatcac 58  Q
    ||||||||||||||||||| |||||| |||||||| |||||||    
T  18921079 ggaacaataggaaaactttgaatatccctccaaacattatcac 18921121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 18909152 - 18909192
Alignment:
Q  16 ggaacaataggaaaactttcaatatctctccaaacgttatc 56  Q
    ||||||||||||||||||  ||||||||||||||| |||||    
T  18909152 ggaacaataggaaaacttggaatatctctccaaacattatc 18909192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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