View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6514_high_8 (Length: 445)
Name: NF6514_high_8
Description: NF6514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6514_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 429
Target Start/End: Complemental strand, 41551437 - 41551034
Alignment:
| Q |
13 |
aaaatcatggtagcatgggttttacaagtttgaaggctttaactatacaatgcttggaaaacaagcctgc---aagttgttcacaaattctggtagctta |
109 |
Q |
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| T |
41551437 |
aaaatcatggtagcatgggttttaaaagtttgaaggctttaactatacaatgcttggaaaacaagcctgctgcaagttgttcacaaattctggtagctta |
41551338 |
T |
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| Q |
110 |
atcacttgcattggtcataacccaaactacgttttgcgtagctaccgtagtatatggagtgcaaagtttgttgtcctaagggtgtaaaaatggtgtattg |
209 |
Q |
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| T |
41551337 |
atcacttgcattggtcataacccaaactacgttttgcgtagctaccgtagtatatggagtgcaaagtttgttgtcctaagagtgtaaaaatggtgtattg |
41551238 |
T |
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| Q |
210 |
gttcgcgtgaaaacataaaggtttagaccaaaaagggcgttatgatggttctgtgttgatgaaccacttatctccatgatatggtggccaatttgagagt |
309 |
Q |
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| T |
41551237 |
gttcgtgtgaaaacataaaggtttagaccaaaaagggcgttatgatggttctgtgttgatgaaccact-------------tggtg---aatttgagagt |
41551154 |
T |
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| Q |
310 |
ttttgacctttggtgaataataggaagcagtgtgagttcttcttgacactgattctattgttactgctttaaacacaccattgcactgcacatttcggtc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41551153 |
ttttgacctttggtgaataataggaagcagtgtgagttcttcttgacactgattctattgttactgctttaaacacaccattgcactgcacatttcggtc |
41551054 |
T |
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| Q |
410 |
atggaagataacattgtttg |
429 |
Q |
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|||||||||||||||||||| |
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| T |
41551053 |
atggaagataacattgtttg |
41551034 |
T |
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