View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6514_high_9 (Length: 416)
Name: NF6514_high_9
Description: NF6514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6514_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 255 - 406
Target Start/End: Complemental strand, 47127150 - 47126999
Alignment:
| Q |
255 |
gcaacttactaagtatcaattttaaaaatatgtacatacatttgtaaatatatatgagatgagaattacattggaaaatataaaattaacacatgtatat |
354 |
Q |
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| T |
47127150 |
gcaactcactaagtatcaattttaaaaatatgtacatacatgtgtaaatatatatgagatgagaattacattggaaaatataaaattaacacatgtatat |
47127051 |
T |
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| Q |
355 |
tatagaactttgcacctgaaaacccagcttttaataaatttggtcgcctatg |
406 |
Q |
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| T |
47127050 |
tatagaactttgcacctgaaaacccagcttttaataaatttggtcgcctatg |
47126999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 33 - 209
Target Start/End: Complemental strand, 47127377 - 47127200
Alignment:
| Q |
33 |
cacataagtttaaacataaataaagtcaaaaacataatacta---gacaatattacgactnnnnnnnaacattgtacttatacactttaccacatgatga |
129 |
Q |
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| T |
47127377 |
cacataagtttaaacatgaataaagtcaaaaacataatactactagacaatattacgactccccc--aacattgtacttatacactttaccacatgatga |
47127280 |
T |
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| Q |
130 |
taattgaaaatgtaaacggtaacatggaaaacttacgaaatgcatcacattgcccttcaaccggaagcttcaagtcatct |
209 |
Q |
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| T |
47127279 |
taattgaaaatgtaaacggtaacatggaaaacttacgaaacgcatcacattgcccttcaaccggaagcttcaagtcatct |
47127200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 47127427 - 47127397
Alignment:
| Q |
1 |
gagttataacacgtcagaatcattgtcttat |
31 |
Q |
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| T |
47127427 |
gagttataacacgtcagaatcattgtcttat |
47127397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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