View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6514_low_1 (Length: 769)
Name: NF6514_low_1
Description: NF6514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6514_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 20 - 476
Target Start/End: Complemental strand, 40790965 - 40790508
Alignment:
| Q |
20 |
tcatggaggtgaagaatattggtggggaacaaatcattnnnnnnn-gtaagataattaaggatcttttacaatatgcctttgcatattatatggaccctt |
118 |
Q |
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| T |
40790965 |
tcatggaggtgaagaatattggtggggaacaaatcattaaaaaaaagtaagataattaaggatcttttacaatatgcctttgcatattatatggaccctt |
40790866 |
T |
|
| Q |
119 |
ctcccacgtatggccacatctacatatatatgaagnnnnnnnncatgaatggaatttttagcactgaagtgagaaagaatctttagtattttgatcgatg |
218 |
Q |
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| T |
40790865 |
ctcccacgtatggccacaactacatatatatgaagaaaaaaaacatgaatggaatttttagcactgaagtaagaaagaatctttagtattttgattgatg |
40790766 |
T |
|
| Q |
219 |
accccatctatcgatcatgattgattgagatcattatatggtcttcacaaagttgtacacaatttcaagctttcaattcttgtattttatacggatataa |
318 |
Q |
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| T |
40790765 |
accccatctatctatcatgattgattgagatcattatatggtcttcacaaagttgtacacaatttcaagctttcaattcttgtattttatacggatataa |
40790666 |
T |
|
| Q |
319 |
tttcttataagtcacagaaattggaattgatcttctttttcacttgctcatgaaatttattatctcttttttaaaatctagtatttttgtctcttgttga |
418 |
Q |
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| T |
40790665 |
tttcttataagtcacagaaattggaattgatcttctttttcacttgctcatgaaatttattatctcttttttaaaatctagtatttttgtctcttgttga |
40790566 |
T |
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| Q |
419 |
aatctttgttatgaaagtgatatgtcaagttatttattgacatgacataaaacctgtt |
476 |
Q |
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| T |
40790565 |
aatctttgttatgaaagtgatatgtcaagttatttattgacatgacataaaacctgtt |
40790508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 570 - 757
Target Start/End: Complemental strand, 40787412 - 40787232
Alignment:
| Q |
570 |
gaagtaacgagaatcaatattacctcaagttgatgcgaaaatttatttgaacttcacatgatttgaattatgaggcataactaaaagacaattatagaaa |
669 |
Q |
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||||||| ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||| || || |
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| T |
40787412 |
gaagtaatgagaatcaatattacctcaagatcatgcgaaaatttatttaaacttcacatgatttgaattatgaggcataactaaatga----------aa |
40787323 |
T |
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| Q |
670 |
attgtatgatgagagccataagtattatatgatataggttggattcaattttatataata---tctgttataataccagctgctatatatt |
757 |
Q |
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| T |
40787322 |
attgtatgatgagagccataagtattatatgatataggttggattcaattttatataatatcttctgttataataccagctgctatatatt |
40787232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 4e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 570 - 757
Target Start/End: Complemental strand, 15007803 - 15007608
Alignment:
| Q |
570 |
gaagtaacgagaatcaatattacctcaagttgatgcgaaaatttatttgaact---tcacatgatttgaattatgaggcataactaaaagacaattatag |
666 |
Q |
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| T |
15007803 |
gaagtaatgtgaatcaatattaccttaagttcatgcgaaaatttatttgaactaattcacatgatttgaattatgaggcctaactaaaagacaattatag |
15007704 |
T |
|
| Q |
667 |
aaaattgtatgatgagagccataagtattatatgatataggttggattcaattttatataatatc-----tgttataataccagctgctatatatt |
757 |
Q |
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| T |
15007703 |
aaaattgtatgatgagagccataagtattatatgatataggttggattcaattttatataatatcttcaatgttataataccagctgctatatatt |
15007608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 599
Target Start/End: Original strand, 52311122 - 52311151
Alignment:
| Q |
570 |
gaagtaacgagaatcaatattacctcaagt |
599 |
Q |
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| T |
52311122 |
gaagtaacgagaatcaatattacctcaagt |
52311151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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