View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6514_low_12 (Length: 342)
Name: NF6514_low_12
Description: NF6514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6514_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 4369652 - 4369328
Alignment:
| Q |
1 |
atggaaaagtgatttttctttgttacactagttttgtctttgtccatgttctgaattcaacattggttagaaaaatataaggttcggaatttagattata |
100 |
Q |
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| T |
4369652 |
atggaaaagtgatttttctttgtttcactagtcttgtctttgtccatgttctga-ttcaacattggttagaaaaatataaggttcggaatttagattata |
4369554 |
T |
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| Q |
101 |
aaccctacattttactctaatactttgctacgttaacctaaaccctttgtctggttattttggtgttatatatctgcatttgtatgcattataggttctt |
200 |
Q |
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| T |
4369553 |
aaccctacattttactctaatactttgctacgttaacctaaaccctttgtctggttattttggtgttatatatctgcatttgtacgcattataggttctt |
4369454 |
T |
|
| Q |
201 |
tttatttgcatgtgtctttgttattttgattataatgaattctgggattttatgttctaatttacatgcatattgatcaattcttaccaatataatattt |
300 |
Q |
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| T |
4369453 |
tttatttgcatgtgtctttgttattttgattataatgaattctgggattttatgttctaatttacatgcatattgatcaattcttaccaatataatattt |
4369354 |
T |
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| Q |
301 |
cttttaattatttttctttatatatg |
326 |
Q |
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| T |
4369353 |
cttttaattatttttctttatgtatg |
4369328 |
T |
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