View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6514_low_14 (Length: 303)

Name: NF6514_low_14
Description: NF6514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6514_low_14
NF6514_low_14
[»] chr1 (3 HSPs)
chr1 (31-286)||(46680905-46681157)
chr1 (242-286)||(46696295-46696339)
chr1 (123-200)||(20256380-20256457)
[»] chr6 (1 HSPs)
chr6 (123-274)||(15667110-15667255)
[»] chr5 (3 HSPs)
chr5 (126-176)||(30703938-30703988)
chr5 (128-176)||(601902-601950)
chr5 (238-274)||(28313354-28313390)
[»] chr7 (1 HSPs)
chr7 (157-202)||(3708172-3708217)
[»] chr2 (1 HSPs)
chr2 (237-274)||(12055156-12055193)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 31 - 286
Target Start/End: Original strand, 46680905 - 46681157
Alignment:
Q  31 ctaaaggcaacaagaatactaggagatcaatagcacagctcaagtgggccacaaaatttatgttgcaataagcattgagtacaaatttgtttatcaaaaa 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46680905 ctaaaggcaacaagaatactaggagatcaatagcacagctcaagtgggccacaaaatttatgttgcaataagcattgagtacaaatttgtttatcaaaaa 46681004  T
Q  131 attaaactacacgccttaaaatattaaaataattctcaatgtgattaaagtaacttaaaatcatcaataataatagacttcaaactaatatttgcattaa 230  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||   |||||||||||| ||||||||||||||| |||    
T  46681005 attaaactacacgccttaaaatattaaaataattctcgatctgattaaagtaacttaaaatcatc---aataatagacttaaaactaatatttgcactaa 46681101  T
Q  231 aattcacctttcaatataaatagtcatgctatcatttagaaaccaacctccctttc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46681102 aattcacctttcaatataaatagtcatgctatcatttagaaaccaacctccctttc 46681157  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 286
Target Start/End: Original strand, 46696295 - 46696339
Alignment:
Q  242 caatataaatagtcatgctatcatttagaaaccaacctccctttc 286  Q
    |||||||||| |||| |||||||||||||||||||||||||||||    
T  46696295 caatataaattgtcacgctatcatttagaaaccaacctccctttc 46696339  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 20256380 - 20256457
Alignment:
Q  123 atcaaaaaattaaactacacgccttaaaatattaaaataattctcaatgtgattaaagtaacttaaaatcatcaataa 200  Q
    |||||||||||||||||||  |||||||| |||||||||||| |  | | |||  || ||||||||||||||||||||    
T  20256380 atcaaaaaattaaactacataccttaaaaaattaaaataattatttacgcgatctaactaacttaaaatcatcaataa 20256457  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 274
Target Start/End: Original strand, 15667110 - 15667255
Alignment:
Q  123 atcaaaaaattaaactacacgccttaaaatattaaaataattctcaatgtgattaaagtaacttaaaatcatcaataataatagacttcaaactaatatt 222  Q
    ||||||||| |||||||||  |||||||| |||||||||| | |  ||| |||  || |||||| |||||||||||||||    |||   |||||||| |    
T  15667110 atcaaaaaagtaaactacataccttaaaaaattaaaataagtttttatgcgatccaactaacttgaaatcatcaataata----actcagaactaatact 15667205  T
Q  223 tgcattaaaattcacctttcaatataaatagtcatgctatcatttagaaacc 274  Q
    |||| |  ||||  |||||| |||||||  ||||||||||||||||||||||    
T  15667206 tgcact--aatttccctttcgatataaaccgtcatgctatcatttagaaacc 15667255  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 30703988 - 30703938
Alignment:
Q  126 aaaaaattaaactacacgccttaaaatattaaaataattctcaatgtgatt 176  Q
    |||||||||||||||||   |||||| ||||||||||| ||||||||||||    
T  30703988 aaaaaattaaactacacatgttaaaaaattaaaataatactcaatgtgatt 30703938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 601950 - 601902
Alignment:
Q  128 aaaattaaactacacgccttaaaatattaaaataattctcaatgtgatt 176  Q
    ||||||||| |||||||| |||||  |||||||||||||||||| ||||    
T  601950 aaaattaaaatacacgccctaaaaatttaaaataattctcaatgcgatt 601902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 28313390 - 28313354
Alignment:
Q  238 ctttcaatataaatagtcatgctatcatttagaaacc 274  Q
    |||||||||||||  ||||||||||||||||||||||    
T  28313390 ctttcaatataaaccgtcatgctatcatttagaaacc 28313354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 3708217 - 3708172
Alignment:
Q  157 aaataattctcaatgtgattaaagtaacttaaaatcatcaataata 202  Q
    ||||||||| ||||||||||  |||||||||| |||||||||||||    
T  3708217 aaataattcacaatgtgattttagtaacttaatatcatcaataata 3708172  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 12055156 - 12055193
Alignment:
Q  237 cctttcaatataaatagtcatgctatcatttagaaacc 274  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  12055156 cctttcaatataaaccgtcatgctatcatttagaaacc 12055193  T

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