View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6514_low_2 (Length: 692)
Name: NF6514_low_2
Description: NF6514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6514_low_2 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 310 - 692
Target Start/End: Complemental strand, 32218560 - 32218177
Alignment:
| Q |
310 |
atatgaattatagtatccttctattaattaatgatatagtatgcttaccataggaaaaacaaatgagtttattaaaaaatatgcacgaatgaaattaca- |
408 |
Q |
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| T |
32218560 |
atatgaatcatagcatccttctattaattaatgatatagtatgcttatcataggaaaaacaaatgagtttattaaaaaa-atgcacgaatgaaattacat |
32218462 |
T |
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| Q |
409 |
-agtctttactcttttctctcttaacaaaaggtttttaaatacaagagttatgcaaatgtattcgatggcgaatctccttgaagatctataggagccact |
507 |
Q |
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| T |
32218461 |
aagtctttactcttttctctcttaacaaaaggtttttaaatacaagagttatgcaaatgtattcggtggcggatctccttggagacctatagaagccact |
32218362 |
T |
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| Q |
508 |
gcaccccaaacttttatataaattgcatattaagcatgatgtttcaactaatatgtcgttgttgcaacgg-tatgcgttctctcaatctattaaaggtcg |
606 |
Q |
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| T |
32218361 |
gcaccccgaacttttatataaattgcatattaggtatgatgtttcaactaatatgtcgttgttgcagcggttttgcgttctctcaatctattaaaggtcg |
32218262 |
T |
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| Q |
607 |
cgcgttcgatcccctaaaggttctggtgggatttgaaccagcatctcccatgttacaatcaagcaatcgtaccaccacaacagttt |
692 |
Q |
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| T |
32218261 |
cgtgttcgatcccctaaaggtcctggtgggatttgaaccagcatc-cccatgttacaattaatcaatcgtaccaccacaccagttt |
32218177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 171 - 331
Target Start/End: Complemental strand, 32218734 - 32218575
Alignment:
| Q |
171 |
taaaacacacaaaaatacattaaagtcattgtgannnnnnncgctttaaagtcacttaatctcaatacatctagattctagtctagagttaaaaattgaa |
270 |
Q |
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| T |
32218734 |
taaagcacacaaaaatacattaaagtcattatgatttttt-cgctttaaagtcacttaatcacaatacatctagattctagtctagagttaaaaattgaa |
32218636 |
T |
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| Q |
271 |
ctatatttataggtgtatgcatgaaacttaacctcatatatatgaattatagtatccttct |
331 |
Q |
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| T |
32218635 |
ctatatttataggtgtatgcatgaaacttcacctcatatatatgaatcatagtatccttct |
32218575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 32219318 - 32219251
Alignment:
| Q |
1 |
ccaaaattctgtgttcacttatcattgttgtatattcaactctcatgcgatcatataaggattgaaat |
68 |
Q |
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| T |
32219318 |
ccaaaattctgtgttcacttatcattgatgtatattcaactctcatgggatcatatagggattgaaat |
32219251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 97
Target Start/End: Complemental strand, 32218841 - 32218808
Alignment:
| Q |
64 |
gaaatttaatgattaggaaaagtcatatagtaac |
97 |
Q |
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| T |
32218841 |
gaaatttaatgactaggaaaagtcatatagtaac |
32218808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 514 - 605
Target Start/End: Complemental strand, 40308678 - 40308586
Alignment:
| Q |
514 |
caaacttttatataaattgcatattaagcatgatgtttcaactaatatgtcgttgttgcaacggt-atgcgttctctcaatctattaaaggtc |
605 |
Q |
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| T |
40308678 |
caaacttttatacaaatttaatattagatatgttgtttctactaatatgttgttgttgcagcggttatgcgttctctcaatctattaaaggtc |
40308586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 573
Target Start/End: Complemental strand, 28480758 - 28480686
Alignment:
| Q |
502 |
gccactgcacc-ccaaacttttatataaattgcatattaagcatgatgtttcaactaatatgtcgttgttgca |
573 |
Q |
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| T |
28480758 |
gccactgcacctcccaacttttatataaatatcatattaggcatgatattacaactaatatgttggtgttgca |
28480686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 692
Target Start/End: Complemental strand, 16967238 - 16967183
Alignment:
| Q |
637 |
atttgaaccagcatctcccatgttacaatcaagcaatcgtaccaccacaacagttt |
692 |
Q |
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| T |
16967238 |
atttgaaccagcatcctccatgttacaatcaagcaattgtacgactacaccagttt |
16967183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 631 - 685
Target Start/End: Complemental strand, 28480656 - 28480602
Alignment:
| Q |
631 |
ggtgggatttgaaccagcatctcccatgttacaatcaagcaatcgtaccaccaca |
685 |
Q |
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| T |
28480656 |
ggtgggatttgaaccggcgtcactcatcttacaatcaagcaattgtaccaccaca |
28480602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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