View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6514_low_3 (Length: 658)

Name: NF6514_low_3
Description: NF6514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6514_low_3
NF6514_low_3
[»] chr1 (20 HSPs)
chr1 (14-658)||(6592227-6592871)
chr1 (18-658)||(6601486-6602121)
chr1 (313-471)||(2010402-2010560)
chr1 (312-580)||(2011703-2011971)
chr1 (323-512)||(3340317-3340509)
chr1 (433-567)||(3372444-3372578)
chr1 (428-580)||(2006195-2006347)
chr1 (92-212)||(3361842-3361962)
chr1 (322-516)||(3361523-3361720)
chr1 (323-405)||(2948497-2948579)
chr1 (157-211)||(3340636-3340690)
chr1 (313-370)||(2019716-2019773)
chr1 (430-574)||(3218662-3218806)
chr1 (314-385)||(3218540-3218611)
chr1 (323-386)||(3349320-3349383)
chr1 (236-294)||(3349433-3349491)
chr1 (321-394)||(3372620-3372693)
chr1 (332-393)||(3378665-3378726)
chr1 (313-370)||(4335023-4335080)
chr1 (36-128)||(3218247-3218339)
[»] chr2 (6 HSPs)
chr2 (416-552)||(20934229-20934365)
chr2 (429-567)||(39273803-39273941)
chr2 (429-516)||(20952809-20952896)
chr2 (428-581)||(20923217-20923370)
chr2 (160-213)||(20923600-20923653)
chr2 (313-365)||(20923436-20923488)
[»] chr5 (1 HSPs)
chr5 (323-404)||(17969781-17969862)
[»] chr4 (1 HSPs)
chr4 (154-207)||(21237664-21237717)


Alignment Details
Target: chr1 (Bit Score: 625; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 14 - 658
Target Start/End: Original strand, 6592227 - 6592871
Alignment:
Q  14 aatatcaatcgttcaagcagaaggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttga 113  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592227 aatatcaatcgttcaagcataaggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttga 6592326  T
Q  114 aaccttgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592327 aaccttgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttg 6592426  T
Q  214 gactgggtttttccagatttctaacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagtgacatcaatgtgatcccga 313  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592427 gtctgggtttttccagatttctaacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagtgacatcaatgtgatcccga 6592526  T
Q  314 gagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagttt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592527 gagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagttt 6592626  T
Q  414 cggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattgg 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6592627 cggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagttggtagataaaatacttgttctggctgcttccttaattgg 6592726  T
Q  514 caaaatcgagagaatatggtctattacatggcctggtaaactactaactctatcgggctcctcgtctgatacgcaaggagactgggattgttctcttctc 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6592727 caaaatcgagagaatatggtctattacatggcctggtaaactactaactctatcgggctcctcgtctgatacgcaaggagactgggactgttctcttctc 6592826  T
Q  614 ttcatagatatagtcagacaaaagctccaatattcagaaaacaaa 658  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  6592827 ttcatagatatagtcagacaaaaactccaatattcagaaaacaaa 6592871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 658
Target Start/End: Original strand, 6601486 - 6602121
Alignment:
Q  18 tcaatcgttcaagcagaaggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaacc 117  Q
    ||||||||||||||| | ||||  | ||||| |||||||||| |||||||| || ||| ||||||| ||||||||||||||||||||||||| |||| ||    
T  6601486 tcaatcgttcaagcaaagggcaagtagatatcaagttttcaaaagcatcttgagacaaggtaacatgttgcagatcaagactcttcaagttcctgaatcc 6601585  T
Q  118 ttgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttggact 217  Q
    ||||||||||||||||||||||||||| || |  ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||  ||    
T  6601586 ttgaaatgttgatggtggtataagccaacagttaaataattctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgttgccct 6601685  T
Q  218 gggtttttccagatttctaacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagtgacatcaatgtgatcccga---g 314  Q
          ||||||||||| | |||||||||||||||  ||| ||||||||||| ||||||||| ||||||||||| || ||  ||||| | || |||   |    
T  6601686 ------ttccagatttccagcacaaactctttaacaggccttctggttagatgaagagtccatcgatcaatatcggtcactccaatgagctcgcgatggg 6601779  T
Q  315 agagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtttc 414  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| ||    
T  6601780 agagcttgaactttttgattggcccagaatggagtaaaagtacatgatcaataattctcgaaagtttgctcttgataactaaaaggtcttcagaagtgtc 6601879  T
Q  415 ggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggc 514  Q
    ||||| |||||   ||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||  |||||||||||||||||    
T  6601880 ggagatacattggctatcaaacacaagatttggaagtgtggcccatttgtacctccatttggttgataaaatacttgttctcactgcttccttaattggc 6601979  T
Q  515 aaaatcgagagaatatggtctattacatggcctggtaaactactaactctatcgggctcctcgtctgatacgcaaggagactgggattgttctcttctct 614  Q
    ||||| |||||||| |||||||||| ||| |||||||||||||||| ||||||||||||| | || | |||||||||||||||||||||||| |||||||    
T  6601980 aaaattgagagaatttggtctattatatgacctggtaaactactaattctatcgggctccgcatccgttacgcaaggagactgggattgttcccttctct 6602079  T
Q  615 tcatagatatagtcagacaaaagctccaatattcagaaaacaaa 658  Q
    |  |||||||| ||||||||||| ||||| | ||||||||||||    
T  6602080 t--tagatatattcagacaaaagatccaagaatcagaaaacaaa 6602121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 313 - 471
Target Start/End: Complemental strand, 2010560 - 2010402
Alignment:
Q  313 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtt 412  Q
    ||||||||||||||| |||||||| || |||   ||||||||||||||||||||||||    ||||||| |||| |||||||||| ||   |  || |||    
T  2010560 agagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaataattgccaaaagctttctctcgataactaaagggcgatgggatgtt 2010461  T
Q  413 tcggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctcca 471  Q
     | |||| |||||  |||||||||||||||||||| | |||||||||||||||||||||    
T  2010460 gcagagacacattgtttatcaaacacaagatttggtattgtggtccatttgtacctcca 2010402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 312 - 580
Target Start/End: Complemental strand, 2011971 - 2011703
Alignment:
Q  312 gagagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagt 411  Q
    |||||||||||||||| |||||||| ||| ||   |||||||||||||| || ||||||    ||||||| ||||||||| ||  | ||| || ||| ||    
T  2011971 gagagagcttgaacttgttgattggcccataataaagtaaaagtacatggtcgataattgccaaaagctttctcttgatagctgcagggtgttcagatgt 2011872  T
Q  412 ttcggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaatt 511  Q
    | | || | |||||    |||||||||||||||||| | |||| |||||||||||||||| | | | |||||||||||||||||  |  | ||| |||||    
T  2011871 tgcagacacacattgtgaatcaaacacaagatttggtattgtgatccatttgtacctccatttgtttgataaaatacttgttctcacaacatccctaatt 2011772  T
Q  512 ggcaaaatcgagagaatatggtctattacatggcctggtaaactactaactctatcgggctcctcgtct 580  Q
    |||||    || | |||  ||||||||||||  |||||||||  ||||| |||||| ||||||||||||    
T  2011771 ggcaagcatgacaaaatccggtctattacatcacctggtaaaacactaattctatccggctcctcgtct 2011703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 323 - 512
Target Start/End: Complemental strand, 3340509 - 3340317
Alignment:
Q  323 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtttc---ggaga 419  Q
    ||||| |||||||| |||||| | ||||||||||||||||||| ||||||| ||| ||||||||  |||||| || ||| ||| ||||||||    || |    
T  3340509 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctctcaataactgaagggtgtttggaagtttcagtagata 3340410  T
Q  420 gacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattg 512  Q
     |||||||  |||||||||||||| ||| |  |||| |||||| |  ||||| | | | ||||||| |||||||||  |||||||||||||||    
T  3340409 cacattcacgatcaaacacaagatctggtaaagtggaccatttctttctccaattgctcgataaaacacttgttcttactgcttccttaattg 3340317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 433 - 567
Target Start/End: Complemental strand, 3372578 - 3372444
Alignment:
Q  433 aaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaatatgg 532  Q
    ||||||||||||||| ||||||  |||||||| |||||||  | | ||||||| |||||||||  ||||||| ||||||||||  |  |||||||| ||     
T  3372578 aaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctcactgcttctttaattggcatgagtgagagaatctga 3372479  T
Q  533 tctattacatggcctggtaaactactaactctatc 567  Q
    ||||||||||| |||||||| | ||||| ||||||    
T  3372478 tctattacatgacctggtaagcaactaattctatc 3372444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 428 - 580
Target Start/End: Complemental strand, 2006347 - 2006195
Alignment:
Q  428 ttatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaa 527  Q
    |||||||||||||||||||| | ||||| ||||||||||||||| | | | ||||||| |||||||||  | |||||| ||||||||||    || ||||    
T  2006347 ttatcaaacacaagatttggtattgtggcccatttgtacctccatttgttggataaaacacttgttctcacagcttccctaattggcaagtgtgacagaa 2006248  T
Q  528 tatggtctattacatggcctggtaaactactaactctatcgggctcctcgtct 580  Q
    | | |||||||||||  ||| |||||  ||||| |||||| |||||| |||||    
T  2006247 tcttgtctattacatcacctagtaaataactaattctatccggctccccgtct 2006195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 92 - 212
Target Start/End: Complemental strand, 3361962 - 3361842
Alignment:
Q  92 tcaagactcttcaagttcttgaaaccttgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataacc 191  Q
    |||||||| |||||||||||||| |||| ||| |||| ||| ||| ||||||| ||   |  ||||||||||||||| |||||||||||||| ||||| |    
T  3361962 tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagc 3361863  T
Q  192 atgaaggtattttatagcgtt 212  Q
    |  |||| || ||||||||||    
T  3361862 accaagggatcttatagcgtt 3361842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 322 - 516
Target Start/End: Complemental strand, 3361720 - 3361523
Alignment:
Q  322 gaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaa---gtttcggag 418  Q
    |||||| |||||||| ||| || | ||||||||||||||||||| ||||||  ||| |||| | ||||||||  || ||||||  |||   || || |||    
T  3361720 gaacttgttgattggcccataatgaagtaaaagtacatgatcaacaattctcaaaaacttgttattgataaccgaagggtcttgggaatctgtatcagag 3361621  T
Q  419 agacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaa 516  Q
    |  || |  |||||||| ||||||||||| || |||  ||||||||  ||||| | | | |||||||||||||||||  |||||||||| ||||||||    
T  3361620 atgcaatgtttatcaaatacaagatttggtagcgtgtaccatttgttactccatttgctggataaaatacttgttctcactgcttccttgattggcaa 3361523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 405
Target Start/End: Original strand, 2948497 - 2948579
Alignment:
Q  323 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtcttt 405  Q
    ||||| |||||||| |||||| | ||||||||||||||||||| ||||||  ||| ||||||||  |||||| || |||||||    
T  2948497 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattctcaaaaacttgctctcaataactgaagggtcttt 2948579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 3340690 - 3340636
Alignment:
Q  157 ttctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgt 211  Q
    ||||||||| ||||||||||||||||| ||||| ||  |||||||||||||||||    
T  3340690 ttctaaatgttgcaaactttgacaagagaataagcagcaaggtattttatagcgt 3340636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 370
Target Start/End: Complemental strand, 2019773 - 2019716
Alignment:
Q  313 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataatt 370  Q
    ||||||||||||||| |||||||| || |||   ||||||||||||||||||||||||    
T  2019773 agagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaataatt 2019716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 574
Target Start/End: Original strand, 3218662 - 3218806
Alignment:
Q  430 atcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaata 529  Q
    ||||||||||| |||||| ||||||  |||||| | |||||| |   | || |||| ||||||| |  |||||||| ||||||||||    ||||||||     
T  3218662 atcaaacacaatatttggtagtgtgtgccatttattcctccattcactggacaaaacacttgttttcactgcttccctaattggcaagtatgagagaatc 3218761  T
Q  530 tggtctattacatggcctggtaaactactaactctatcgggctcc 574  Q
    || ||||||||||| |||||||| | ||||| |||||| ||||||    
T  3218762 tgatctattacatgacctggtaagcaactaattctatccggctcc 3218806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 385
Target Start/End: Original strand, 3218540 - 3218611
Alignment:
Q  314 gagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctc 385  Q
    ||||||| |||||| ||||| ||||||||| | |||| |||||||||||||| ||||||  | |||||||||    
T  3218540 gagagctggaacttgttgatcggtccagaatgaagtagaagtacatgatcaacaattctcaacagcttgctc 3218611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 386
Target Start/End: Complemental strand, 3349383 - 3349320
Alignment:
Q  323 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctct 386  Q
    ||||| |||||| | |||||| | ||||||||||||||||||||||||||  ||| ||||||||    
T  3349383 aacttgttgattagcccagaatgaagtaaaagtacatgatcaataattctcaaaaacttgctct 3349320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 236 - 294
Target Start/End: Complemental strand, 3349491 - 3349433
Alignment:
Q  236 aacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagt 294  Q
    ||||||||||||||||  || | || |||||||| |||| |||||||||||||||||||    
T  3349491 aacacaaactctttaatatgtcttccggttagatgaagaatccaccgatcaatatcagt 3349433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 394
Target Start/End: Complemental strand, 3372693 - 3372620
Alignment:
Q  321 tgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataact 394  Q
    ||||||| |||||||| |||||| |  |||||||||||||||||| ||||||  ||| |||| | |||||||||    
T  3372693 tgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataact 3372620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 393
Target Start/End: Complemental strand, 3378726 - 3378665
Alignment:
Q  332 attggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataac 393  Q
    ||||| |||||| | ||||||||||||||||| ||||||||  ||| |||||||| ||||||    
T  3378726 attggcccagaatgaagtaaaagtacatgatcgataattctcaaaaacttgctctcgataac 3378665  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 370
Target Start/End: Original strand, 4335023 - 4335080
Alignment:
Q  313 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataatt 370  Q
    ||||| ||||||| | ||||||||||||||| | | ||||||||||||||||| ||||    
T  4335023 agagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatt 4335080  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 3218247 - 3218339
Alignment:
Q  36 ggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaatgttg 128  Q
    |||||| |||||| |||||||||| |||||||| || || |||||| |  |  || |||||||| |||||||||||||| |||| ||| ||||    
T  3218247 ggcagccggatatcaagttttcaaaagcatcttgagccattgtaacctgatatagttcaagacttttcaagttcttgaagcctttaaacgttg 3218339  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 416 - 552
Target Start/End: Complemental strand, 20934365 - 20934229
Alignment:
Q  416 gagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggca 515  Q
    ||||||||||   ||||||||||||||||||| ||||||  |||||||| |||||| |   ||||||||| |||||||||  |||||||| |||||||||    
T  20934365 gagagacattgtctatcaaacacaagatttgggagtgtgtaccatttgttcctccattttttagataaaacacttgttctcactgcttccctaattggca 20934266  T
Q  516 aaatcgagagaatatggtctattacatggcctggtaa 552  Q
    |    |  ||||| |||||||||||||| ||||||||    
T  20934265 agtaagtcagaatctggtctattacatgacctggtaa 20934229  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 429 - 567
Target Start/End: Complemental strand, 39273941 - 39273803
Alignment:
Q  429 tatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaat 528  Q
    ||||||||||||||||||| ||||||  ||||||||||||||| | | | || |||| |||||||||  |||||||| ||||||||||    || |||||    
T  39273941 tatcaaacacaagatttggtagtgtgtaccatttgtacctccattggctggacaaaacacttgttctcactgcttccctaattggcaagcaagacagaat 39273842  T
Q  529 atggtctattacatggcctggtaaactactaactctatc 567  Q
     || ||||||||||| || ||||| | ||||| ||||||    
T  39273841 ctgatctattacatgacccggtaagcaactaattctatc 39273803  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 429 - 516
Target Start/End: Complemental strand, 20952896 - 20952809
Alignment:
Q  429 tatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaa 516  Q
    |||||||||||||||||||||||||| ||||||||| |||||| |   ||||||||| |||||||||  |||| ||| ||||| ||||    
T  20952896 tatcaaacacaagatttggaagtgtgttccatttgttcctccattttctagataaaacacttgttctcactgcatccctaatttgcaa 20952809  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 428 - 581
Target Start/End: Complemental strand, 20923370 - 20923217
Alignment:
Q  428 ttatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaa 527  Q
    ||||| ||||||||||  ||  |||||| |||||| | |||||| | | ||||||||| |||||||||  |||||||||| |||| |||    || ||||    
T  20923370 ttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctccctgcttccttgattgacaagcgtgaaagaa 20923271  T
Q  528 tatggtctattacatggcctggtaaactactaactctatcgggctcctcgtctg 581  Q
     ||||||||||| |||  ||||||| | ||||| |||||||| ||||| |||||    
T  20923270 aatggtctattatatgatctggtaagcaactaattctatcggactccttgtctg 20923217  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 20923653 - 20923600
Alignment:
Q  160 taaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttg 213  Q
    ||||||||| |||||||||||||| ||||| ||  ||||||| |||||||||||    
T  20923653 taaatgatgtaaactttgacaagagaataagcaccaaggtatgttatagcgttg 20923600  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 20923488 - 20923436
Alignment:
Q  313 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaa 365  Q
    ||||| ||||||||| |||||||| |||||| | |||||||||||||| ||||    
T  20923488 agagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaa 20923436  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 404
Target Start/End: Complemental strand, 17969862 - 17969781
Alignment:
Q  323 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctt 404  Q
    ||||| |||||||| || ||| | |||||||||||||||||||| |||||  ||| ||||| || ||||||| ||| |||||    
T  17969862 aacttgttgattggccctgaatgaagtaaaagtacatgatcaatgattctcaaaaacttgccctcgataactgaaaagtctt 17969781  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 21237717 - 21237664
Alignment:
Q  154 taattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttata 207  Q
    ||||||||||||||| |||||||||||||| ||||| ||  ||||||| |||||    
T  21237717 taattctaaatgatgtaaactttgacaagagaataagcaccaaggtatcttata 21237664  T

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