View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6514_low_4 (Length: 581)
Name: NF6514_low_4
Description: NF6514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6514_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 480; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 16977438 - 16977933
Alignment:
| Q |
1 |
ggttttgccaacatttacatcatcataatttacaacatcaagatcatcatgaagattcacactttcttttgctttactaacatttacatcatcatcagag |
100 |
Q |
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| T |
16977438 |
ggttttgccaacatttacatcgtcataatttacaacatcaagatcatcatgaagattcacactttcttttgctttactaacatttacatcatcatcagag |
16977537 |
T |
|
| Q |
101 |
acattttgcactgccttttgtatatctgatatttccttctggtttgaagaagaagaagaaccctttattcgatctgaatgctccacttcatcagtgtgta |
200 |
Q |
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| T |
16977538 |
acattttgcactgccctttgtatatctgatatttccttctggtttgaagaagaagaagaaccctttattcgatctgaatgctccacttcatcagtgtgta |
16977637 |
T |
|
| Q |
201 |
caaaagaatccttcttcttctcaaaggcattagaaattgctacactaccataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgct |
300 |
Q |
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| T |
16977638 |
caaaagaatccttcttcttctcaaaggcattagaaattgctacactaccataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgct |
16977737 |
T |
|
| Q |
301 |
catctcctcaccataatctgaatgctccatttcaccattgtttacataaggacttttatccttcatctcctcattctttgtggaagatggaatattttca |
400 |
Q |
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| T |
16977738 |
catctcctcaccataatctgaatgctccatttcaccattgtttacagaaggacttttatccttcatctcctcattctttgtggaagatggactattttca |
16977837 |
T |
|
| Q |
401 |
acgtttatctcctcatcattcaatccagaaattccactttgtttatccatcacctctctaaccaaatcctcgaccacattcaagtattttctaccg |
496 |
Q |
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| T |
16977838 |
acgtttatctcctcatcattcaatccagaaattccactttgtttatccatcacctctctaaccaaatcctcgaccacattcaagtattttctaccg |
16977933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 214 - 310
Target Start/End: Complemental strand, 10601969 - 10601873
Alignment:
| Q |
214 |
cttcttctcaaaggcattagaaattgctacactaccataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgctcatctcctca |
310 |
Q |
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| T |
10601969 |
cttcttctcaaaggtagtagaagttgctacactaccataatctgaatgctccacttcatcattctttatagaaggacttttatccttcacctcctca |
10601873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 10601936 - 10601871
Alignment:
| Q |
310 |
accataatctgaatgctccatttcaccattgtttacataaggacttttatccttcatctcctcatt |
375 |
Q |
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| T |
10601936 |
accataatctgaatgctccacttcatcattctttatagaaggacttttatccttcacctcctcatt |
10601871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 464
Target Start/End: Original strand, 16968577 - 16968664
Alignment:
| Q |
377 |
tttgtggaagatggaatattttcaacgtttatctcctcatcattcaatccagaaattccactttgtttatccatcacctctctaacca |
464 |
Q |
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| T |
16968577 |
tttgtggaagatggactattctcaacattcacctcttcatcattcctctcagaaattccactttgtctatccattacctctctcacca |
16968664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 16977396 - 16977463
Alignment:
| Q |
28 |
atttacaacatcaagatcatcatgaagattcacactttcttttgctttactaacatttacatcatcat |
95 |
Q |
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|||||||||||||| ||||||| ||| ||||||||||||||| | ||| | |||||||||||| |||| |
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| T |
16977396 |
atttacaacatcaaaatcatcacgaacattcacactttctttggttttgccaacatttacatcgtcat |
16977463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 493
Target Start/End: Original strand, 17008001 - 17008068
Alignment:
| Q |
426 |
cagaaattccactttgtttatccatcacctctctaaccaaatcctcgaccacattcaagtattttcta |
493 |
Q |
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|||||||||||| |||| |||||||||||||||||| ||| | ||| |||| |||||| | ||||||| |
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| T |
17008001 |
cagaaattccacattgtctatccatcacctctctaatcaacttctccaccatattcaaatcttttcta |
17008068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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