View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6514_low_5 (Length: 559)
Name: NF6514_low_5
Description: NF6514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6514_low_5 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 30 - 478
Target Start/End: Complemental strand, 18079624 - 18079176
Alignment:
| Q |
30 |
tcttaaatatggaagaagtctttcagcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccag |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18079624 |
tcttaaatatggaagaagtctttcagcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccag |
18079525 |
T |
|
| Q |
130 |
attatcacatttcaaatatagaatacaacaaatcacatcaatagttaatctaaaaaggggagaaacagaacctcaattacgtaaacacatgtaataccaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18079524 |
attatcacatttcaaatatagaatacaacaaatcacatcaatagttaatctaaaaaggggagaaacagaacctcaattacgtaaacacatgtaataccaa |
18079425 |
T |
|
| Q |
230 |
attcaaacatatatacatgcgcgcgcacacaaacacataatcgaaatataatgagcaaagagatcatgtgatgtcacctttggattccgcatgtttattt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18079424 |
attcaaacatatatacatgcgcgcgcacacaaacacataattgaaatataatgagcaaagagatcatgtgatgtcacctttggattccgcatgtttattt |
18079325 |
T |
|
| Q |
330 |
tttgcttcggctgttcaatgcttttagcttcacttttctatcagtccttaaagaataacctttactatcatcagataaaacatcactttccgaattcttt |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18079324 |
tttgcttcggctgttcaatgcttttagcttcacttttctatcagtccttaaagaataacctttactatcatcagataaaacatcactctccgaattcttt |
18079225 |
T |
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| Q |
430 |
tcactgatcagttcattctcatcattcttaacttttttaccactttccc |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18079224 |
tcactgatcagttcattctcatcattcttaacttttttaccattttccc |
18079176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 192 - 551
Target Start/End: Complemental strand, 51479401 - 51479047
Alignment:
| Q |
192 |
aaacagaacctcaattacgtaaacacatgtaataccaaattcaaacatatatacatgcgcgcgcacacaaacacataatcgaaatataatgagcaaagag |
291 |
Q |
| |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||| | ||| | ||||| ||| |||||||||||||||||||| |
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| T |
51479401 |
aaacagaaccgcaattacgtaaacacatgtaacgccaaattcaaacatatatatgtat------acatacacacagaattgaaatataatgagcaaagag |
51479308 |
T |
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| Q |
292 |
atcatgtgatgtcacctttggattccgcatgtttattttttgcttcggctgttcaatgcttttagctt-cacttttctatcagtccttaaagaataacct |
390 |
Q |
| |
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|||||||||||||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||| || |||||||||||||||||| |
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| T |
51479307 |
atcatgtgatgtcaccttaggattccgtttgttaattttttgcttcagctgttcaatgcttttagctttcacttttttaaaggtccttaaagaataacct |
51479208 |
T |
|
| Q |
391 |
ttactatcatcagataaaacatcactttccgaattcttttcactgatcagttcattctcatcattcttaacttttttaccactttccccctcttgttcat |
490 |
Q |
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||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||||| |
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| T |
51479207 |
ttattatcatcagataaaacattactttccaaattcttttcactgatcagttcattctcatcaatcttaacttttttaccattatctccctcttgttcat |
51479108 |
T |
|
| Q |
491 |
cttcatcactttcttcagaactataacttaccttcctttttctaccacgtttcttcttctc |
551 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
51479107 |
cttcgtcattttcttcagaactataacttaccttactttttctaccaggtttcttcttctc |
51479047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 376 - 548
Target Start/End: Complemental strand, 51496194 - 51496022
Alignment:
| Q |
376 |
cttaaagaataacctttactatcatcagataaaacatcactttccgaattcttttcactgatcagttcattctcatcattcttaacttttttaccacttt |
475 |
Q |
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||||||||||| |||||| ||||||||||||||||| |||| || ||||||||||||||||||||||||||||| ||| ||||||| ||| ||||| ||| |
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| T |
51496194 |
cttaaagaatagcctttattatcatcagataaaacaccactctctgaattcttttcactgatcagttcattctcctcaatcttaacatttctaccatttt |
51496095 |
T |
|
| Q |
476 |
ccccctcttgttcatcttcatcactttcttcagaactataacttaccttcctttttctaccacgtttcttctt |
548 |
Q |
| |
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|||| |||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
51496094 |
ccccatcttgttcatcttcgtcattttcttcagaactataacttaccttcttttttctaccaggtttcttctt |
51496022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 30 - 180
Target Start/End: Complemental strand, 51479983 - 51479832
Alignment:
| Q |
30 |
tcttaaatatggaagaagt-ctttcagcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaacca |
128 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
51479983 |
tcttaaatatggaagaagttctttcaccatatacttggagagctcgaactcatggttgttgttggtttctgtcttcgttttaatttcctgtagtgaacca |
51479884 |
T |
|
| Q |
129 |
gattatcacatttcaaatatagaatacaacaaatcacatcaatagttaatct |
180 |
Q |
| |
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||| |||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
51479883 |
gatgatcacatttcaaatgtagaatacaacaaatcacatgaatagttaatct |
51479832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 30207358 - 30207522
Alignment:
| Q |
30 |
tcttaaatatggaagaagtcttt-cagcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaacca |
128 |
Q |
| |
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||||||||| ||||||||| ||| || |||||||||||||||||| |||||||||| ||| ||||| | ||| |||||||||||||||| ||||| |
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| T |
30207358 |
tcttaaatacggaagaagtattttcaacatatacttggagagctcaacctcatggtcattgtaggtttctcgcttatctttaattgcctgtagtaaacca |
30207457 |
T |
|
| Q |
129 |
gattatcacatttcaaatatagaatacaacaaatcacatcaatagttaatctaaaaaggggagaa |
193 |
Q |
| |
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|||||||||||||||||| |||||| |||||||||||| ||||||| ||||| || |||||||| |
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| T |
30207458 |
gattatcacatttcaaatgtagaatgcaacaaatcacaagaatagttgatctataagggggagaa |
30207522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 31 - 166
Target Start/End: Complemental strand, 51497021 - 51496884
Alignment:
| Q |
31 |
cttaaatatggaagaagt-ctttcagcatatacttggagagctcgacctcatggttgatgttggtttttgtcttcattttaattgcctgtagtgaaccag |
129 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| |||||| |||| ||||||||| || ||||||||| |||||| |||||||| |||| ||||| | || |
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| T |
51497021 |
cttaaatatggaaaaagtactttcagcatatatttggagggctcaacctcatggctgttgttggtttccgtcttctttttaatttcctgcagtgaccaag |
51496922 |
T |
|
| Q |
130 |
attat-cacatttcaaatatagaatacaacaaatcaca |
166 |
Q |
| |
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||||| | ||||| |||| |||||||||| |||||||| |
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| T |
51496921 |
attatccccattttaaatgtagaatacaaaaaatcaca |
51496884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 138003 - 138043
Alignment:
| Q |
30 |
tcttaaatatggaagaag-tctttcagcatatacttggaga |
69 |
Q |
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|||||||||||||||||| | |||||||||||||||||||| |
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| T |
138003 |
tcttaaatatggaagaaggtatttcagcatatacttggaga |
138043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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