View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6514_low_6 (Length: 514)
Name: NF6514_low_6
Description: NF6514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6514_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 502
Target Start/End: Complemental strand, 44574254 - 44573770
Alignment:
| Q |
17 |
acattctgtcactttctttcgaaatggtgctcttggaagaacaaataataattttgaaacattgaattttcagggaataaatgtaatatgtgtaaagagg |
116 |
Q |
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| T |
44574254 |
acattctgtcgctttctttcgaaatgttgctcttggaagaacaaataataattttccaacattgaattttcagggaataaatgtaatatgtgtaaagagg |
44574155 |
T |
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| Q |
117 |
ggaggggatactcaaatgagcagccatagtgaatggctgctcacggttcctaacaaaccagatgcaattgattttagcttcattcccattacctctcttc |
216 |
Q |
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| T |
44574154 |
ggaggggatactcaaatgagcagccatagtgaatggctgctcacggttcctaacaaaccagatgcaattgattttagcttcattcccattacctctcttc |
44574055 |
T |
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| Q |
217 |
ttaaaggtgctcctggaaggggattcctctcccatgctatcaacctctatcttcgatgtaagt---------ttaatctctaaatggataaatactttat |
307 |
Q |
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| T |
44574054 |
ttaaaggtgcttctggaaggggattcctctcccatgctatcaacctctatcttcgatgtaagtttaaataaattaatctctaaatggataaatactttat |
44573955 |
T |
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| Q |
308 |
tgacttccaagcacacacactataatgtgaagaattaaattgatatgaaattcagataagccaccaatgtcagatttgtcatactttcttgactaccaag |
407 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44573954 |
tgacttccaagcacacacac----------ataattaaattgatatgaaattcagataagccaccaatgtcagatttgtcatactttcttgactaccaag |
44573865 |
T |
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| Q |
408 |
gatacaagatttgggctcctgttcacaatgatctacctcttggtccaactacaaacatatctactatttcaccttttctcactctcaatttgatg |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44573864 |
gatacaagatttgggctcctgttcacaatgatctacctcttggtccaactacaaacatatctactatttcaccttttctcactctcaatttgatg |
44573770 |
T |
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