View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6514_low_7 (Length: 512)
Name: NF6514_low_7
Description: NF6514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6514_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 102 - 505
Target Start/End: Complemental strand, 32218560 - 32218156
Alignment:
| Q |
102 |
atatgaattatagtatccttctattaattaatgatatagtatgcttaccataggaaaaacaaatgagtttattaaaaaatatgcacgaatgaaattaca- |
200 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32218560 |
atatgaatcatagcatccttctattaattaatgatatagtatgcttatcataggaaaaacaaatgagtttattaaaaaa-atgcacgaatgaaattacat |
32218462 |
T |
|
| Q |
201 |
-agtctttactcttttctctcttaacaaaaggtttttaaatacaagagttatgcaaatgtattcgatggcgaatctccttgaagatctataggagccact |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| |||||| ||||||| |
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| T |
32218461 |
aagtctttactcttttctctcttaacaaaaggtttttaaatacaagagttatgcaaatgtattcggtggcggatctccttggagacctatagaagccact |
32218362 |
T |
|
| Q |
300 |
gcaccccaaacttttatataaattgcatattaagcatgatgtttcaactaatatgtcgttgttgcaacgg-tatgcgttctctcaatctattaaaggtcg |
398 |
Q |
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||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| |
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| T |
32218361 |
gcaccccgaacttttatataaattgcatattaggtatgatgtttcaactaatatgtcgttgttgcagcggttttgcgttctctcaatctattaaaggtcg |
32218262 |
T |
|
| Q |
399 |
cgcgttcgatcccctaaaggttctggtgggatttgaaccagcatctcccatgttacaatcaagcaatcgtaccaccacaacagtttacaacattgtatat |
498 |
Q |
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|| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |||||||||||||||| |||||||||||||||||||| |
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| T |
32218261 |
cgtgttcgatcccctaaaggtcctggtgggatttgaaccagcatc-cccatgttacaattaatcaatcgtaccaccacaccagtttacaacattgtatat |
32218163 |
T |
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| Q |
499 |
tcttcga |
505 |
Q |
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| ||||| |
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| T |
32218162 |
ttttcga |
32218156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 32218697 - 32218575
Alignment:
| Q |
1 |
tttcgctttaaagtcacttaatctcaatacatctagattctagtctagagttaaaaattgaactatatttataggtgtatgcatgaaacttaacctcata |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32218697 |
tttcgctttaaagtcacttaatcacaatacatctagattctagtctagagttaaaaattgaactatatttataggtgtatgcatgaaacttcacctcata |
32218598 |
T |
|
| Q |
101 |
tatatgaattatagtatccttct |
123 |
Q |
| |
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||||||||| ||||||||||||| |
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| T |
32218597 |
tatatgaatcatagtatccttct |
32218575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 397
Target Start/End: Complemental strand, 40308678 - 40308586
Alignment:
| Q |
306 |
caaacttttatataaattgcatattaagcatgatgtttcaactaatatgtcgttgttgcaacggt-atgcgttctctcaatctattaaaggtc |
397 |
Q |
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| T |
40308678 |
caaacttttatacaaatttaatattagatatgttgtttctactaatatgttgttgttgcagcggttatgcgttctctcaatctattaaaggtc |
40308586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 499
Target Start/End: Complemental strand, 40308553 - 40308505
Alignment:
| Q |
451 |
ttacaatcaagcaatcgtaccaccacaacagtttacaacattgtatatt |
499 |
Q |
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||||||||||||||| ||||||||||| || ||||||||||||||||| |
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|
| T |
40308553 |
ttacaatcaagcaattgtaccaccacaccaacttacaacattgtatatt |
40308505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 499
Target Start/End: Original strand, 23328854 - 23328939
Alignment:
| Q |
414 |
aaaggttctggtgggatttgaaccagcatctcccatgttacaatcaagcaatcgtaccaccacaacagtttacaacattgtatatt |
499 |
Q |
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|||||| || |||||||||||||||| ||||| ||||||| | ||| ||||| ||||| ||| |||||||||| |||||||||| |
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| T |
23328854 |
aaaggtcctagtgggatttgaaccagaatctctcatgttatattcatgcaattgtaccgttacaccagtttacaaaattgtatatt |
23328939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 486
Target Start/End: Complemental strand, 16967238 - 16967181
Alignment:
| Q |
429 |
atttgaaccagcatctcccatgttacaatcaagcaatcgtaccaccacaacagtttac |
486 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||| || ||| |||||||| |
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|
| T |
16967238 |
atttgaaccagcatcctccatgttacaatcaagcaattgtacgactacaccagtttac |
16967181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 28480758 - 28480686
Alignment:
| Q |
294 |
gccactgcacc-ccaaacttttatataaattgcatattaagcatgatgtttcaactaatatgtcgttgttgca |
365 |
Q |
| |
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| T |
28480758 |
gccactgcacctcccaacttttatataaatatcatattaggcatgatattacaactaatatgttggtgttgca |
28480686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 477
Target Start/End: Complemental strand, 28480656 - 28480602
Alignment:
| Q |
423 |
ggtgggatttgaaccagcatctcccatgttacaatcaagcaatcgtaccaccaca |
477 |
Q |
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||||||||||||||| || || | ||| ||||||||||||||| ||||||||||| |
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| T |
28480656 |
ggtgggatttgaaccggcgtcactcatcttacaatcaagcaattgtaccaccaca |
28480602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 46671363 - 46671280
Alignment:
| Q |
414 |
aaaggttctggtgggatttgaaccagcatctcccatgttacaatcaagcaatcgtaccaccacaacagtttacaacattgtata |
497 |
Q |
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|||||| || |||||||||||||||||||| | ||||||||| ||| | ||| |||||| |||| || ||||||| ||||||| |
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| T |
46671363 |
aaaggtcctagtgggatttgaaccagcatccctcatgttacattcatgaaattgtaccatcacaccaatttacaattttgtata |
46671280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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