View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6515_low_2 (Length: 240)
Name: NF6515_low_2
Description: NF6515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6515_low_2 |
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| [»] scaffold0687 (1 HSPs) |
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Alignment Details
Target: scaffold0687 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0687
Description:
Target: scaffold0687; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3083 - 2860
Alignment:
| Q |
1 |
attcgattgccacaattctataagccgagtctttaggcttacta--gattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaact |
98 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3083 |
attcgtttgccacaattctataagccgagtctttaggcttactatagattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaatt |
2984 |
T |
|
| Q |
99 |
gatttcaaagttttgtctgatgctgtcatcaccaccactacttccatcaacgagtttggtgatcttgtatttaaatgtagaagtatgtctcttatctagt |
198 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
2983 |
gatttcaaagttttgtctgatgctgtcaccaccaccactacttctatcaacgagtttggtgatcttttatttaaatgtagaagtacgtctcttatctagt |
2884 |
T |
|
| Q |
199 |
agacccgattttatagtgtggtat |
222 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
2883 |
agacccgattttatagtgtggtat |
2860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7593735 - 7593512
Alignment:
| Q |
1 |
attcgattgccacaattctataagccgagtctttaggcttacta--gattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaact |
98 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7593735 |
attcgtttgccacaattctataagccgagtctttaggcttactatagattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaatt |
7593636 |
T |
|
| Q |
99 |
gatttcaaagttttgtctgatgctgtcatcaccaccactacttccatcaacgagtttggtgatcttgtatttaaatgtagaagtatgtctcttatctagt |
198 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
7593635 |
gatttcaaagttttgtctgatgctgtcaccaccaccactacttctatcaacgagtttggtgatcttttatttaaatgtagaagtacgtctcttatctagt |
7593536 |
T |
|
| Q |
199 |
agacccgattttatagtgtggtat |
222 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
7593535 |
agacccgattttatagtgtggtat |
7593512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 34752952 - 34752795
Alignment:
| Q |
24 |
gccgagtctttaggcttactagattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaactgatttcaaagttttgtctgatgctg |
123 |
Q |
| |
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||||||||||||||| | |||||| |||| |||||| |||| ||| |||||||| ||| || ||||||| || |||| ||| | || ||||||||| |
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|
| T |
34752952 |
gccgagtctttaggccttctagatgctatcaaagtggctatctcacatggaatgtgtgacatcatgtttgagaccgattcaaaaatcttatctgatgcta |
34752853 |
T |
|
| Q |
124 |
tcatcaccaccactacttccatcaacgagtttggtgatcttgtatttaaatgtagaag |
181 |
Q |
| |
|
| ||||||||||| | ||||||||||||| |||||||||||| | |||||||||| |
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|
| T |
34752852 |
ttgccaccaccactattcccatcaacgagttcggtgatcttgtaactcaatgtagaag |
34752795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 11629321 - 11629475
Alignment:
| Q |
27 |
gagtctttaggcttactagattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaactgatttcaaagttttgtctgatgctgtca |
126 |
Q |
| |
|
|||||||||||| | |||||| |||| |||||| |||| ||| ||||||||| ||| || ||||||| || |||| ||| | || |||||| || | |
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| T |
11629321 |
gagtctttaggccttctagatgctatcaaagtggctatctcacatggaatgcgtgacatcatgtttgagaccgattcaaaaatcttatctgatactattg |
11629420 |
T |
|
| Q |
127 |
tcaccaccactacttccatcaacgagtttggtgatcttgtatttaaatgtagaag |
181 |
Q |
| |
|
||||||||||| | ||||||||||||| |||||||||||| | |||||||||| |
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|
| T |
11629421 |
ccaccaccactattcccatcaacgagttcggtgatcttgtaactcaatgtagaag |
11629475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 167
Target Start/End: Complemental strand, 9180990 - 9180850
Alignment:
| Q |
27 |
gagtctttaggcttactagattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaactgatttcaaagttttgtctgatgctgtca |
126 |
Q |
| |
|
|||||||||||| | |||||| |||| |||||| |||| ||| ||||||||| ||| || ||||||| || |||| ||| | || ||||||||| | |
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|
| T |
9180990 |
gagtctttaggccttctagatgctatcaaagtggctatctcacatggaatgcgtgacatcatgtttgagaccgattcaaaaatcttatctgatgctattg |
9180891 |
T |
|
| Q |
127 |
tcaccaccactacttccatcaacgagtttggtgatcttgta |
167 |
Q |
| |
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| || |||||| | ||||||||||||| |||||||||||| |
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| T |
9180890 |
ccgccgccactattcccatcaacgagttcggtgatcttgta |
9180850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 2262632 - 2262764
Alignment:
| Q |
27 |
gagtctttaggcttactagattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaactgatttcaaagttttgtctgatgctgtca |
126 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||| ||||| |||||||| | ||||||| ||| |
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|
| T |
2262632 |
gagtctttaggc--actagatgctattaaagtggctatttcaaatgaaatgcatgatgatttgtttgaaagtgattcaaaagttttatttgatgctctca |
2262729 |
T |
|
| Q |
127 |
tcaccaccactacttccatcaacgagtttggtgat |
161 |
Q |
| |
|
||||||||||||| |||||||||| ||| |||| |
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|
| T |
2262730 |
ccaccaccactactctcatcaacgagattgatgat |
2262764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 49 - 182
Target Start/End: Original strand, 1480876 - 1481007
Alignment:
| Q |
49 |
ctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaactgatttcaaagttttgtctgatgctgtcatcaccaccactacttccatcaa |
148 |
Q |
| |
|
|||| ||||||||||| ||| |||||||| ||| ||| ||||| | ||||||| ||| | || ||||||||| | ||||||||||||| ||||||| |
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|
| T |
1480876 |
ctatcaaagtgactatctcacatggaatg--tgacgtcatgtttaagactgattcaaaaatcttatctgatgctcttgccaccaccactactgccatcaa |
1480973 |
T |
|
| Q |
149 |
cgagtttggtgatcttgtatttaaatgtagaagt |
182 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||| |
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|
| T |
1480974 |
cgagttcggtgatcttgtaactcaatgtagaagt |
1481007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 167
Target Start/End: Complemental strand, 42328162 - 42328022
Alignment:
| Q |
27 |
gagtctttaggcttactagattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaactgatttcaaagttttgtctgatgctgtca |
126 |
Q |
| |
|
|||||||||||| | |||||| |||| |||||| |||| ||| ||||||||| ||| || ||||||| || |||| ||| | || ||||||||| | |
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|
| T |
42328162 |
gagtctttaggccttctagatgctatcaaagtggctatctcacatggaatgcgtgacatcatgtttgagaccgattcaaaaatcttatctgatgctattg |
42328063 |
T |
|
| Q |
127 |
tcaccaccactacttccatcaacgagtttggtgatcttgta |
167 |
Q |
| |
|
| || |||||| | ||||||||||||| |||||||||||| |
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|
| T |
42328062 |
ccgccgccactattcccatcaacgagttcggtgatcttgta |
42328022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 50182655 - 50182752
Alignment:
| Q |
24 |
gccgagtctttaggcttactagattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaactgatttcaaagttttgtctgatgc |
121 |
Q |
| |
|
||||||||| |||||||||| ||| ||||||||||| ||||||||||||| ||||||| ||| | |||||||| |||| ||| || |||||||||| |
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|
| T |
50182655 |
gccgagtctctaggcttacttgatgctattaaagtggctatttcaaatgggatgcatgttgtactatttgaaacagattcaaaaattctgtctgatgc |
50182752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 39500946 - 39501100
Alignment:
| Q |
27 |
gagtctttaggcttactagattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaactgatttcaaagttttgtctgatgctgtca |
126 |
Q |
| |
|
|||||||| ||| | |||| | |||| |||||| |||| ||| ||||||||||||| || ||||| | | |||| ||| | || ||||||||| | |
|
|
| T |
39500946 |
gagtctttcggccttctaggtgctatcaaagtggctatctcacatggaatgcatgacatcatgtttaagatcgattcaaaaatcttatctgatgctattg |
39501045 |
T |
|
| Q |
127 |
tcaccaccactacttccatcaacgagtttggtgatcttgtatttaaatgtagaag |
181 |
Q |
| |
|
||||||||||| |||||||||| |||| |||||||||||| | |||||||||| |
|
|
| T |
39501046 |
ccaccaccactatttccatcaacaagttcggtgatcttgtaactcaatgtagaag |
39501100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 167
Target Start/End: Complemental strand, 10159214 - 10159074
Alignment:
| Q |
27 |
gagtctttaggcttactagattctattaaagtgactatttcaaatggaatgcatgatgtcgtgtttgaaactgatttcaaagttttgtctgatgctgtca |
126 |
Q |
| |
|
|||||||||||| | |||||| |||| |||||| |||| ||| ||||||||| ||| || ||||||| || |||| ||| | || ||||||||| | |
|
|
| T |
10159214 |
gagtctttaggccttctagatgctatcaaagtggctatctcacatggaatgcgtgacatcatgtttgagaccgattcaaaaatcttatctgatgctattg |
10159115 |
T |
|
| Q |
127 |
tcaccaccactacttccatcaacgagtttggtgatcttgta |
167 |
Q |
| |
|
| || |||||| | ||||||||||||| |||||||||||| |
|
|
| T |
10159114 |
ccgccgccactattcccatcaacgagttcggtgatcttgta |
10159074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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