View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6516_high_2 (Length: 468)

Name: NF6516_high_2
Description: NF6516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6516_high_2
NF6516_high_2
[»] chr6 (18 HSPs)
chr6 (16-453)||(33141063-33141490)
chr6 (328-416)||(33135359-33135448)
chr6 (219-263)||(15443690-15443734)
chr6 (381-451)||(33135173-33135243)
chr6 (196-300)||(33135206-33135307)
chr6 (40-101)||(33141673-33141734)
chr6 (277-325)||(33135249-33135297)
chr6 (395-454)||(10760849-10760908)
chr6 (202-265)||(33135171-33135233)
chr6 (325-372)||(33135173-33135220)
chr6 (221-271)||(2140503-2140553)
chr6 (221-255)||(29049888-29049922)
chr6 (232-265)||(10285178-10285211)
chr6 (206-263)||(31115480-31115537)
chr6 (41-91)||(33135662-33135714)
chr6 (219-263)||(13211301-13211345)
chr6 (278-326)||(33135411-33135459)
chr6 (207-251)||(33135415-33135459)
[»] chr2 (4 HSPs)
chr2 (221-269)||(19613635-19613683)
chr2 (221-252)||(44605161-44605192)
chr2 (221-251)||(2073949-2073979)
chr2 (396-451)||(19613621-19613677)
[»] chr8 (7 HSPs)
chr8 (223-263)||(14134694-14134734)
chr8 (219-250)||(8798851-8798882)
chr8 (221-252)||(14227228-14227259)
chr8 (221-252)||(37225765-37225796)
chr8 (221-251)||(3508059-3508089)
chr8 (221-258)||(34201068-34201105)
chr8 (221-257)||(1639491-1639527)
[»] chr5 (3 HSPs)
chr5 (184-251)||(18607081-18607149)
chr5 (219-251)||(16434402-16434434)
chr5 (207-251)||(28296335-28296379)
[»] chr4 (7 HSPs)
chr4 (221-261)||(10546145-10546185)
chr4 (221-251)||(19230331-19230361)
chr4 (206-252)||(23915135-23915181)
chr4 (408-460)||(5654611-5654664)
chr4 (184-260)||(31243532-31243609)
chr4 (221-261)||(5654613-5654653)
chr4 (221-249)||(44796984-44797012)
[»] chr1 (2 HSPs)
chr1 (219-251)||(48785284-48785316)
chr1 (206-251)||(43609825-43609870)
[»] chr7 (1 HSPs)
chr7 (207-251)||(44172898-44172942)


Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 453
Target Start/End: Complemental strand, 33141490 - 33141063
Alignment:
Q  16 caatcatcacgcttttcaacaccgtcttccaacacctacacatcaagctatctaactttgcagcaccaacacttctgatagaaggtcggactaaacacat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33141490 caatcatcacgcttttcaacaccgtcttccaacacctacacatcaagctatctaactttgcagcaccaacacttctgatagaaggtcggactaaacacat 33141391  T
Q  116 ctccgtgtccaacactgacacagcatgacacatatgaccacattgaagtgtgtactggacatgtgtcagtgtccgacaccaacacagcatgacacatgtg 215  Q
    ||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33141390 ctccgtgtccaacactgacaca----------tatgaccacattgaagtgtgtactggacatgtgtcagtgtccgacaccaacacagcatgacacatgtg 33141301  T
Q  216 agcatattgaattatgttattttctcaaattattattattgtcgacgtatatgtgtagcatgacacatgtgatcacattgaattacattattttcacaac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33141300 agcatattgaattatgttattttctcaaattattattattgtcgacgtatatgtgtagcatgacacatgtgatcacattgaattacattattttcacaac 33141201  T
Q  316 ttattatcagatcacattgaattacgttatttcacaacttattatcagtgtcgacgtgtcaatgtccgtttcagtgcatgacacatgtcatcacattgaa 415  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33141200 ttattaccagatcacattgaattacgttatttcacaacttattatcagtgtcgacgtgtcaatgtccgtttcagtgcatgacacatgtcatcacattgaa 33141101  T
Q  416 tatgttagtttatcaaattattatcagtgtcgacgtgt 453  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  33141100 tatgttagtttctcaaattattatcagtgtcgacgtgt 33141063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 416
Target Start/End: Complemental strand, 33135448 - 33135359
Alignment:
Q  328 cacattgaattacgttattt-cacaacttattatcagtgtcgacgtgtcaatgtccgtttcagtgcatgacacatgtcatcacattgaat 416  Q
    |||||||||||  ||||||| ||||| |||||||||| |||||| ||||| ||||| | ||| |||||||| ||||| ||||||||||||    
T  33135448 cacattgaattgtgttattttcacaaattattatcagagtcgacatgtcagtgtccctgtcactgcatgacccatgtgatcacattgaat 33135359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 15443734 - 15443690
Alignment:
Q  219 atattgaattatgttattttctcaaattattattattgtcgacgt 263  Q
    ||||||||||||||||||||||||||||||||||  |||||||||    
T  15443734 atattgaattatgttattttctcaaattattattgatgtcgacgt 15443690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 33135243 - 33135173
Alignment:
Q  381 ccgtttcagtgcatgacacatgtcatcacattgaa-tatgttagtttatcaaattattatcagtgtcgacgt 451  Q
    |||| |||||||||||||||| | ||||||||||| ||||||| ||| |||||| |||||||||||||||||    
T  33135243 ccgtgtcagtgcatgacacatatgatcacattgaattatgtta-tttctcaaatcattatcagtgtcgacgt 33135173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 33135307 - 33135206
Alignment:
Q  196 aacacagcatgacacatgtgagcatattgaattatgttattttctcaaattattattattgtcgacgtatatgtgtagcatgacacatgtgatcacattg 295  Q
    ||||||||  |||| |||||| || ||||||||||||||||||| ||||||||||| |  |||| ||| |  ||   ||||||||||| |||||||||||    
T  33135307 aacacagcccgacaaatgtgatcacattgaattatgttattttcacaaattattatcagggtcgccgtgtcagt---gcatgacacatatgatcacattg 33135211  T
Q  296 aatta 300  Q
    |||||    
T  33135210 aatta 33135206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 33141734 - 33141673
Alignment:
Q  40 tcttccaacacctacacatcaagctatctaactttgcagcaccaacacttctgatagaaggt 101  Q
    ||||||| ||||||||||||||||||||||||| |  |||||| |||||| |||| ||||||    
T  33141734 tcttccaccacctacacatcaagctatctaactctatagcaccgacacttttgatggaaggt 33141673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 33135297 - 33135249
Alignment:
Q  277 gacacatgtgatcacattgaattacattattttcacaacttattatcag 325  Q
    |||| |||||||||||||||||||  |||||||||||| ||||||||||    
T  33135297 gacaaatgtgatcacattgaattatgttattttcacaaattattatcag 33135249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 454
Target Start/End: Original strand, 10760849 - 10760908
Alignment:
Q  395 gacacatgtcatcacattgaatatgttagtttatcaaattattatcagtgtcgacgtgtc 454  Q
    ||||| ||| || ||||| ||||||| | ||| |||||||||||||||||||||||||||    
T  10760849 gacacgtgtgattacattcaatatgtcattttctcaaattattatcagtgtcgacgtgtc 10760908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 33135233 - 33135171
Alignment:
Q  202 gcatgacacatgtgagcatattgaattatgttattttctcaaattattattattgtcgacgtat 265  Q
    ||||||||||| ||| || |||||||||||||| |||||||||| ||||| | |||||||||||    
T  33135233 gcatgacacatatgatcacattgaattatgtta-tttctcaaatcattatcagtgtcgacgtat 33135171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 372
Target Start/End: Complemental strand, 33135220 - 33135173
Alignment:
Q  325 gatcacattgaattacgttatttcacaacttattatcagtgtcgacgt 372  Q
    ||||||||||||||| |||||||| ||| | |||||||||||||||||    
T  33135220 gatcacattgaattatgttatttctcaaatcattatcagtgtcgacgt 33135173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 2140503 - 2140553
Alignment:
Q  221 attgaattatgttattttctcaaattattattattgtcgacgtatatgtgt 271  Q
    |||||||||||| |||||||||||||||||| | |||||| |||| |||||    
T  2140503 attgaattatgtcattttctcaaattattatcaatgtcgatgtatttgtgt 2140553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 29049922 - 29049888
Alignment:
Q  221 attgaattatgttattttctcaaattattattatt 255  Q
    |||||||||||| ||||||||||||||||||||||    
T  29049922 attgaattatgtaattttctcaaattattattatt 29049888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 10285178 - 10285211
Alignment:
Q  232 ttattttctcaaattattattattgtcgacgtat 265  Q
    ||||||||||||| ||||||||||||||||||||    
T  10285178 ttattttctcaaagtattattattgtcgacgtat 10285211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 31115537 - 31115480
Alignment:
Q  206 gacacatgtgagcatattgaattatgttattttctcaaattattattattgtcgacgt 263  Q
    ||||||| ||| || |||||||| |||||||| ||||||||||||||  |||||||||    
T  31115537 gacacatatgatcacattgaattgtgttatttactcaaattattattggtgtcgacgt 31115480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 33135714 - 33135662
Alignment:
Q  41 cttccaacacctacacatcaagc--tatctaactttgcagcaccaacacttct 91  Q
    |||||||||||||||||||||||  |||||||||||| |||||  ||||||||    
T  33135714 cttccaacacctacacatcaagctatatctaactttgtagcacttacacttct 33135662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 13211301 - 13211345
Alignment:
Q  219 atattgaattatgttattttctcaaattattattattgtcgacgt 263  Q
    ||||| |||||||| |||||||||||||||||| | |||||||||    
T  13211301 atattaaattatgtcattttctcaaattattatcaatgtcgacgt 13211345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 33135459 - 33135411
Alignment:
Q  278 acacatgtgatcacattgaattacattattttcacaacttattatcaga 326  Q
    |||||||||| |||||||||||   |||||||||||| |||||||||||    
T  33135459 acacatgtgaacacattgaattgtgttattttcacaaattattatcaga 33135411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 33135459 - 33135415
Alignment:
Q  207 acacatgtgagcatattgaattatgttattttctcaaattattat 251  Q
    |||||||||| || |||||||| |||||||||| |||||||||||    
T  33135459 acacatgtgaacacattgaattgtgttattttcacaaattattat 33135415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 19613635 - 19613683
Alignment:
Q  221 attgaattatgttattttctcaaattattattattgtcgacgtatatgt 269  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||    
T  19613635 attgaattatgttattttctcaaattattatgagtgtcgacgtatatgt 19613683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 44605161 - 44605192
Alignment:
Q  221 attgaattatgttattttctcaaattattatt 252  Q
    ||||||||||||||||||||||||||||||||    
T  44605161 attgaattatgttattttctcaaattattatt 44605192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 251
Target Start/End: Complemental strand, 2073979 - 2073949
Alignment:
Q  221 attgaattatgttattttctcaaattattat 251  Q
    |||||||||||||||||||||||||||||||    
T  2073979 attgaattatgttattttctcaaattattat 2073949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 451
Target Start/End: Original strand, 19613621 - 19613677
Alignment:
Q  396 acacatgtcatcacattgaat-atgttagtttatcaaattattatcagtgtcgacgt 451  Q
    |||||| |||| ||||||||| |||||| ||| |||||||||||| |||||||||||    
T  19613621 acacatatcattacattgaattatgttattttctcaaattattatgagtgtcgacgt 19613677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 14134734 - 14134694
Alignment:
Q  223 tgaattatgttattttctcaaattattattattgtcgacgt 263  Q
    |||||||||| ||||||||||||||||| ||||||||||||    
T  14134734 tgaattatgtgattttctcaaattattagtattgtcgacgt 14134694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 250
Target Start/End: Original strand, 8798851 - 8798882
Alignment:
Q  219 atattgaattatgttattttctcaaattatta 250  Q
    ||||||||||||||||||||||||||||||||    
T  8798851 atattgaattatgttattttctcaaattatta 8798882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Complemental strand, 14227259 - 14227228
Alignment:
Q  221 attgaattatgttattttctcaaattattatt 252  Q
    ||||||||||||||||||||||||||||||||    
T  14227259 attgaattatgttattttctcaaattattatt 14227228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 37225765 - 37225796
Alignment:
Q  221 attgaattatgttattttctcaaattattatt 252  Q
    ||||||||||||||||||||||||||||||||    
T  37225765 attgaattatgttattttctcaaattattatt 37225796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 251
Target Start/End: Complemental strand, 3508089 - 3508059
Alignment:
Q  221 attgaattatgttattttctcaaattattat 251  Q
    |||||||||||||||||||||||||||||||    
T  3508089 attgaattatgttattttctcaaattattat 3508059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 34201068 - 34201105
Alignment:
Q  221 attgaattatgttattttctcaaattattattattgtc 258  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  34201068 attgaattatgtcattttctcaaattattattagtgtc 34201105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 1639527 - 1639491
Alignment:
Q  221 attgaattatgttattttctcaaattattattattgt 257  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  1639527 attgaattatgtcattttctcaaaatattattattgt 1639491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 18607081 - 18607149
Alignment:
Q  184 gtgtccgacaccaacacag-catgacacatgtgagcatattgaattatgttattttctcaaattattat 251  Q
    ||||| ||||||||||||| || ||||| | |||  | |||||||||||||||||||||||||||||||    
T  18607081 gtgtcggacaccaacacagacacgacacctatgattacattgaattatgttattttctcaaattattat 18607149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 16434402 - 16434434
Alignment:
Q  219 atattgaattatgttattttctcaaattattat 251  Q
    |||||||||||||||||||| ||||||||||||    
T  16434402 atattgaattatgttattttttcaaattattat 16434434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 28296379 - 28296335
Alignment:
Q  207 acacatgtgagcatattgaattatgttattttctcaaattattat 251  Q
    |||||| |||| | |||||||||||| ||||||||||||||||||    
T  28296379 acacatatgagtacattgaattatgtcattttctcaaattattat 28296335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 10546185 - 10546145
Alignment:
Q  221 attgaattatgttattttctcaaattattattattgtcgac 261  Q
    |||||||||||| |||||||||||||||||| |||||||||    
T  10546185 attgaattatgtcattttctcaaattattatcattgtcgac 10546145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 251
Target Start/End: Original strand, 19230331 - 19230361
Alignment:
Q  221 attgaattatgttattttctcaaattattat 251  Q
    |||||||||||||||||||||||||||||||    
T  19230331 attgaattatgttattttctcaaattattat 19230361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 23915181 - 23915135
Alignment:
Q  206 gacacatgtgagcatattgaattatgttattttctcaaattattatt 252  Q
    ||||||||| |  ||||||||||||||||||||||||||| ||||||    
T  23915181 gacacatgtaattatattgaattatgttattttctcaaatgattatt 23915135  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 5654611 - 5654664
Alignment:
Q  408 acattgaat-atgttagtttatcaaattattatcagtgtcgacgtgtctgtgct 460  Q
    ||||||||| |||| | ||| |||||||||||||||||||||| ||||||||||    
T  5654611 acattgaattatgtcattttctcaaattattatcagtgtcgacatgtctgtgct 5654664  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 31243532 - 31243609
Alignment:
Q  184 gtgtccgacaccaacacag-catgacacatgtgagcatattgaattatgttattttctcaaattattattattgtcga 260  Q
    ||||||||||||||||| | |||||||| | |||  | | |||||||||| |||||||||||||||||| | ||||||    
T  31243532 gtgtccgacaccaacaccgacatgacacctatgattacactgaattatgtcattttctcaaattattataagtgtcga 31243609  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 5654613 - 5654653
Alignment:
Q  221 attgaattatgttattttctcaaattattattattgtcgac 261  Q
    |||||||||||| |||||||||||||||||| | |||||||    
T  5654613 attgaattatgtcattttctcaaattattatcagtgtcgac 5654653  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 44796984 - 44797012
Alignment:
Q  221 attgaattatgttattttctcaaattatt 249  Q
    |||||||||||||||||||||||||||||    
T  44796984 attgaattatgttattttctcaaattatt 44797012  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 48785284 - 48785316
Alignment:
Q  219 atattgaattatgttattttctcaaattattat 251  Q
    |||||||||||||||||||||||||||||||||    
T  48785284 atattgaattatgttattttctcaaattattat 48785316  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 43609825 - 43609870
Alignment:
Q  206 gacacatgtgagcatattgaattatgttattttctcaaattattat 251  Q
    |||||||||||  | ||| |||||||||||||||||||||||||||    
T  43609825 gacacatgtgattacattcaattatgttattttctcaaattattat 43609870  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 44172898 - 44172942
Alignment:
Q  207 acacatgtgagcatattgaattatgttattttctcaaattattat 251  Q
    ||||||||||  | |||||||||||| ||||||||||||||||||    
T  44172898 acacatgtgattacattgaattatgtcattttctcaaattattat 44172942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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