View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6516_low_4 (Length: 380)
Name: NF6516_low_4
Description: NF6516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6516_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 47536145 - 47536289
Alignment:
| Q |
20 |
accataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaaccgtaaaacatgaaaacctcttcctcgattcttct |
119 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47536145 |
accataacacccaccaacccaaacttaaacgataaactcacagatgtcaaactttgatatgaaaaccgtaaaacgcgaaaacctcttcctcgattcttct |
47536244 |
T |
|
| Q |
120 |
ttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtga |
164 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47536245 |
ttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtga |
47536289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 23153254 - 23153109
Alignment:
| Q |
20 |
accataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaaccgtaaaacatgaaaacctcttcctcgatt-cttc |
118 |
Q |
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||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||| |||||| |||||| ||||||||||||||||||| | || |
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| T |
23153254 |
accataacacccaccaatccaaacttaaacgataaactcacgaaggtcaaactttgatacgaaaactgtaaaatgcgaaaacctcttcctcgattccgtc |
23153155 |
T |
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| Q |
119 |
tttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtga |
164 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
23153154 |
tttcaattcacaaggtatgtaaagttgtgtaatttataaaaggtga |
23153109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 42962848 - 42962683
Alignment:
| Q |
23 |
ataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaaccgtaaaacatgaaaacctcttcctcgattcttctttc |
122 |
Q |
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||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
42962848 |
ataacacccaccaacccaaacttaaacgataaactcacagatgtcaaactttgatatgaaaaccgtaaaacgtgaaaatctcttcctcgattcttctttc |
42962749 |
T |
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| Q |
123 |
atttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnctctggagaaatctttt |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42962748 |
atttcatgtggtatgtaaagttgtgtaatttataaaaggtgatttttttctctggagaaatctttt |
42962683 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 44218324 - 44218464
Alignment:
| Q |
20 |
accataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaaccgtaaaacatgaaaacctcttcctcgattcttct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44218324 |
accataacacccaccaacccaaacttaaacgataaactcacagatgtcaaactttgatatgaaaaccgtaaaacgcgaaaacctcttcctcgattcttct |
44218423 |
T |
|
| Q |
120 |
ttcatttcatgtggtatgtaaagttgtgtaatttataaaag |
160 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
44218424 |
ttcatttcatgtggtatgtaaagttgtgtaatttataaaag |
44218464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 21569735 - 21569903
Alignment:
| Q |
20 |
accataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaaccgtaaaacatgaaaacctcttcctcgattcttct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||| ||||| ||||||| |||||||||||||||||||| ||| |
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| T |
21569735 |
accataacacccaccaacccaaacttaaacgataaactcacagatgtcaaactttgatactaaaacagtaaaacgcgaaaacctcttcctcgattcgtct |
21569834 |
T |
|
| Q |
120 |
ttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnctctggagaaatctttt |
188 |
Q |
| |
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|||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21569835 |
ttcaattcacgtggtatgtaaagttgtgtaatttataaaaggtgatttttttctctggagaaatctttt |
21569903 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 371597 - 371428
Alignment:
| Q |
20 |
accataacacccaccaacccaaacttaaacgagaaactcacaaatatcaaactttgatatgaaaa-ccgtaaaacatgaaaacctcttcctcgattcttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| |
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| T |
371597 |
accataacacccaccaacccaaacttaaacgataaactcacagatgtcaaactttgatatgaaaaaccgtaaaacgcgaaaacctcttcctcgatttttc |
371498 |
T |
|
| Q |
119 |
tttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgannnnnnnctctggagaaatctttt |
188 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
371497 |
tttcatttcatgtggtatgtaaagttgtgtaatttataaaaggtgatttttttctctggagaaatctttt |
371428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 219 - 346
Target Start/End: Complemental strand, 370448 - 370332
Alignment:
| Q |
219 |
ttaaactgattccagaaatcattttcaaggaagaatgtcgtcagtaaaacaagatcacctcagtgattcttccaaccctatcattagattgctattacta |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
370448 |
ttaaactgattccagaaatcattttcaaggaagaatgtcgtcagtaaaacaagatcacctcagtgattc-----------tcattagattgctattacta |
370360 |
T |
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| Q |
319 |
tacaaatctcaaagcttttacataattc |
346 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
370359 |
tacaaatctcaaagcttttacataattc |
370332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 27226051 - 27226017
Alignment:
| Q |
130 |
gtggtatgtaaagttgtgtaatttataaaaggtga |
164 |
Q |
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||||||||||||||||||||||| ||||||||||| |
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| T |
27226051 |
gtggtatgtaaagttgtgtaattgataaaaggtga |
27226017 |
T |
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