View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6516_low_5 (Length: 332)
Name: NF6516_low_5
Description: NF6516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6516_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 1133486 - 1133624
Alignment:
| Q |
17 |
aagattacacataaaataaatgttgagaaacaaaaataagtccctgcataaaatgatgctgcagaattatgagaatgacgtggcccgtgattgatgcttt |
116 |
Q |
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| T |
1133486 |
aagattacacataaaataaatgttgagaaacaaaaataagtccctgcataaaatgatgctgcagaattatgagaatgacgtggcccgtgattgatgcttt |
1133585 |
T |
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| Q |
117 |
cttcgccgacaactccagcagtagttccaccgacgacaa |
155 |
Q |
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| T |
1133586 |
cttcgccgacaactccagcagtagttccaccgacgacaa |
1133624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 233 - 322
Target Start/End: Original strand, 1133702 - 1133791
Alignment:
| Q |
233 |
tttcttacagtaacagatagttcatgtttgtgctcattaatacgttccataaacacaactttgtgattcacccttgtagagactcctttg |
322 |
Q |
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| T |
1133702 |
tttcttacagtaacagatagttcatgtttgtgctcattaatacgttccataaacacaactttgtgattcacccttgtagagactcctttg |
1133791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 1141709 - 1141766
Alignment:
| Q |
25 |
acataaaataaatgttgagaaacaaaaataagtccctgcataaaatgatgctgcagaa |
82 |
Q |
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| T |
1141709 |
acataaaataaatgttgagacacaaacataaggccctgcagataatgatgatgcagaa |
1141766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 1160317 - 1160396
Alignment:
| Q |
233 |
tttcttacagtaacagatagttcatgtttgtgctcattaatacgttccataaacacaactttgtgattcacccttgtaga |
312 |
Q |
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| T |
1160317 |
tttcttatagtaacagatagttcatgtttgtgtgcattttgactttccacaaacccatctttgtggttcaaccttgtaga |
1160396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 1137055 - 1137112
Alignment:
| Q |
25 |
acataaaataaatgttgagaaacaaaaataagtccctgcataaaatgatgctgcagaa |
82 |
Q |
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| T |
1137055 |
acataaaagaaatgttgagacacaaacataaggccctgcagataatgatggtgcagaa |
1137112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 1148476 - 1148540
Alignment:
| Q |
25 |
acataaaataaatgttgagaaacaaaaataagtccctgcataaaatgatgctgcagaattatgag |
89 |
Q |
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| T |
1148476 |
acataaaatcaatgttgagacacaaaaatgaggcactgcagataatgttgttgcagaattatgag |
1148540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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