View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6516_low_6 (Length: 315)
Name: NF6516_low_6
Description: NF6516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6516_low_6 |
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| [»] scaffold0174 (3 HSPs) |
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Alignment Details
Target: scaffold0174 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: scaffold0174
Description:
Target: scaffold0174; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 32414 - 32565
Alignment:
| Q |
1 |
gattaaaggtttagttttcattcttgacttaccaagagtttaattgtagtgaaatctgaattcaatcaacattatttatagtgattatgaaacaagacaa |
100 |
Q |
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| T |
32414 |
gattaaaggtttagttttcattcttgacttaccaagagtttaattgtagtgaaatctgaattcaattagcattatttatagtgatcatgaaacaagacaa |
32513 |
T |
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| Q |
101 |
atacaagaacaaaagagctattagatattgtatattgtatagtaaatatttg |
152 |
Q |
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| T |
32514 |
atacgtgaactaaagagctattagatattgtatattgtatagtaaatatttg |
32565 |
T |
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Target: scaffold0174; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 33164 - 33223
Alignment:
| Q |
235 |
aatattactggtaaggtgtttacgctttggcatgagtcattactgttttagtgtttgtta |
294 |
Q |
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| T |
33164 |
aatattactggaaaggtgtttaccctttggcatgagtcattactgttttagtgtttgtta |
33223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0174; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 32932 - 32988
Alignment:
| Q |
157 |
atggtgagaataatgggccatcaacatgtattgatttgtaaattgggaagtgtttgt |
213 |
Q |
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| T |
32932 |
atggtgagaataatgggccgtcaacatatattgatttgtaaattgcgacgtgtttgt |
32988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 24895414 - 24895590
Alignment:
| Q |
8 |
ggtttagttttcattcttgacttaccaagagtttaattgtagtgaaatctgaattcaatcaacattatttatagtgattatgaaacaagacaaatacaag |
107 |
Q |
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| T |
24895414 |
ggtttagttttcatggttgatttacttggagtttaattgtagtaaaatctgaattcaatcaacattatttatagtgatcatgggacaagataaatatatg |
24895513 |
T |
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| Q |
108 |
aacaaaagagc--tattagatattgtatattgtatagtaaatatttgactaatggtgagaataatgggccatcaaca |
182 |
Q |
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| T |
24895514 |
aacaaaagagccttgttagataatatataatgcatagtaaaaatttgactcattgtgataataatgggccatcaaca |
24895590 |
T |
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