View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6516_low_7 (Length: 267)
Name: NF6516_low_7
Description: NF6516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6516_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 16387741 - 16387989
Alignment:
| Q |
1 |
atgacgtatggaaccatttttaaagcgttgactattagtagtgactaccttcctctcgcaaacgaaggcataccttttggttctgcaacatggattgctt |
100 |
Q |
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| T |
16387741 |
atgacgtatggaaccatttttaaagcgttgactattagtagtgactaccttgctctcgccaacgaaggcataccttttggttctgcaacatggattgctt |
16387840 |
T |
|
| Q |
101 |
acgccggaatatgctgttttcttgttctctttgccggtgtcatgtccggtctcacacttggtctcatgtctctcagtcttgtcgacctcgaaattcttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16387841 |
acgccggaatatgctgttttcttgttctctttgccggagtcatgtccggtctcacacttggtctcatgtctctcagtcttgtagacctcgaaattcttga |
16387940 |
T |
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| Q |
201 |
acgtagtggttctccttctcagaaaaaacaagctggtagttacttgatc |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16387941 |
acgtagtggttctccttctcagaaaaaacaagctggtagttacttgatc |
16387989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 53 - 238
Target Start/End: Original strand, 48667276 - 48667461
Alignment:
| Q |
53 |
ctctcgcaaacgaaggcataccttttggttctgcaacatggattgcttacgccggaatatgctgttttcttgttctctttgccggtgtcatgtccggtct |
152 |
Q |
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| T |
48667276 |
ctctcgccaatgaaggcataccttttggatccgtaacatggatcgcttatgtcggcatctgttgttttctcgtatgctttgctggtatcatgtccggtct |
48667375 |
T |
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| Q |
153 |
cacacttggtctcatgtctctcagtcttgtcgacctcgaaattcttgaacgtagtggttctccttctcagaaaaaacaagctggta |
238 |
Q |
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| T |
48667376 |
cactcttggtctcatgtctctcagtctcgtcgaccttgaaattcttgaacgtagtggttctccttctgagaaaaaacaagccggta |
48667461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 2792543 - 2792653
Alignment:
| Q |
62 |
acgaaggcataccttttggttctgcaacatggattgcttacgccggaatatgctgttttcttgttctctttgccggtgtcatgtccggtctcacacttgg |
161 |
Q |
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||||| ||||||||||||| || ||||||||||| |||||||| | | ||||||||| ||||||| ||| |||| |||||||||||||||| |||| |
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| T |
2792543 |
acgaaagcataccttttgggtcggcaacatggatcgcttacgctgtcttctgctgttttattgttctattttccggactcatgtccggtctcaccattgg |
2792642 |
T |
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| Q |
162 |
tctcatgtctc |
172 |
Q |
| |
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| || |||||| |
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| T |
2792643 |
tttcttgtctc |
2792653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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