View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6516_low_8 (Length: 235)

Name: NF6516_low_8
Description: NF6516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6516_low_8
NF6516_low_8
[»] chr3 (10 HSPs)
chr3 (17-63)||(27999419-27999465)
chr3 (19-58)||(11409601-11409640)
chr3 (156-199)||(50037311-50037354)
chr3 (167-201)||(20276052-20276086)
chr3 (155-197)||(46483249-46483291)
chr3 (166-199)||(20370309-20370342)
chr3 (156-201)||(53996297-53996342)
chr3 (167-199)||(15881090-15881122)
chr3 (155-199)||(27999714-27999758)
chr3 (155-199)||(52453274-52453318)
[»] chr7 (4 HSPs)
chr7 (156-199)||(31038540-31038583)
chr7 (155-199)||(35142166-35142210)
chr7 (156-199)||(41527560-41527603)
chr7 (166-197)||(44473338-44473369)
[»] chr1 (8 HSPs)
chr1 (156-199)||(16967212-16967255)
chr1 (156-201)||(32944734-32944779)
chr1 (157-199)||(43021647-43021689)
chr1 (156-201)||(8253737-8253782)
chr1 (156-201)||(13054871-13054916)
chr1 (166-199)||(29701348-29701381)
chr1 (166-198)||(13778841-13778873)
chr1 (167-199)||(26755616-26755648)
[»] chr8 (4 HSPs)
chr8 (156-199)||(10871912-10871955)
chr8 (156-199)||(27718912-27718955)
chr8 (156-201)||(30427729-30427774)
chr8 (166-199)||(44654994-44655027)
[»] chr5 (4 HSPs)
chr5 (156-199)||(24485699-24485742)
chr5 (156-199)||(39610359-39610402)
chr5 (156-201)||(10515359-10515404)
chr5 (166-199)||(22394035-22394068)
[»] chr4 (9 HSPs)
chr4 (156-199)||(36490568-36490611)
chr4 (156-201)||(16743302-16743347)
chr4 (156-201)||(19854563-19854608)
chr4 (166-199)||(39171398-39171431)
chr4 (166-199)||(43374300-43374333)
chr4 (166-198)||(9196214-9196246)
chr4 (18-58)||(9329313-9329353)
chr4 (18-58)||(9383096-9383136)
chr4 (156-200)||(20383487-20383531)
[»] chr2 (5 HSPs)
chr2 (156-199)||(33063986-33064029)
chr2 (166-199)||(9799438-9799471)
chr2 (156-201)||(29734689-29734734)
chr2 (166-199)||(41187485-41187518)
chr2 (166-199)||(41204529-41204562)
[»] scaffold1694 (1 HSPs)
scaffold1694 (156-194)||(160-198)
[»] scaffold0007 (1 HSPs)
scaffold0007 (166-199)||(244479-244512)
[»] chr6 (2 HSPs)
chr6 (166-199)||(16130765-16130798)
chr6 (166-203)||(24827048-24827085)


Alignment Details
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 27999419 - 27999465
Alignment:
Q  17 aataatggtaaccatctcaccttcttctgtaatgttatttttatacc 63  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  27999419 aataatggtaaccatctcaccttcttatgtaatgttatttttatacc 27999465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 11409601 - 11409640
Alignment:
Q  19 taatggtaaccatctcaccttcttctgtaatgttattttt 58  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  11409601 taatggtaaccctctcaccttcttctgtgatgttattttt 11409640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 50037354 - 50037311
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||||| ||||||||||||||| ||||| ||||||||||||    
T  50037354 ttgcatacattatgcattgtccataccaactgagctaagctcac 50037311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 20276086 - 20276052
Alignment:
Q  167 atgcattgtccatatcaactaagctaagctcacaa 201  Q
    ||||||||||||||||||||||||||| |||||||    
T  20276086 atgcattgtccatatcaactaagctaaactcacaa 20276052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 46483291 - 46483249
Alignment:
Q  155 tttgcatacaatatgcattgtccatatcaactaagctaagctc 197  Q
    |||||||| | ||||||||||||||| ||||||||||||||||    
T  46483291 tttgcatatattatgcattgtccataccaactaagctaagctc 46483249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 20370309 - 20370342
Alignment:
Q  166 tatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||||||||||||||||| ||||||||||||    
T  20370309 tatgcattgtccatatcaactgagctaagctcac 20370342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 53996342 - 53996297
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 201  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  53996342 ttgcatatattatgcattgtccataccaactgagctaagctcacaa 53996297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 15881122 - 15881090
Alignment:
Q  167 atgcattgtccatatcaactaagctaagctcac 199  Q
    |||||||||||||||||||| ||||||||||||    
T  15881122 atgcattgtccatatcaacttagctaagctcac 15881090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 27999714 - 27999758
Alignment:
Q  155 tttgcatacaatatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||||||||| ||||| |||||| ||||| ||||||||||||    
T  27999714 tttgcatacaatacgcattatccataccaactgagctaagctcac 27999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 52453274 - 52453318
Alignment:
Q  155 tttgcatacaatatgcattgtccatatcaactaagctaagctcac 199  Q
    |||||||| | |||||||||||| ||| |||||||||||||||||    
T  52453274 tttgcatatattatgcattgtccctattaactaagctaagctcac 52453318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 31038540 - 31038583
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||    
T  31038540 ttgcatacaatatgcattgtccataccaactgagctaagctcac 31038583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 35142166 - 35142210
Alignment:
Q  155 tttgcatacaatatgcattgtccatatcaactaagctaagctcac 199  Q
    |||||||| | ||||||||||||||||||||| ||||||||||||    
T  35142166 tttgcatatattatgcattgtccatatcaactgagctaagctcac 35142210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 41527603 - 41527560
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||    
T  41527603 ttgcatatattatgcattgtccataccaactaagctaagctcac 41527560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 197
Target Start/End: Original strand, 44473338 - 44473369
Alignment:
Q  166 tatgcattgtccatatcaactaagctaagctc 197  Q
    ||||||||||||||||||||||||||||||||    
T  44473338 tatgcattgtccatatcaactaagctaagctc 44473369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 16967212 - 16967255
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||| | ||||||||||||||||||||||||||||||||||    
T  16967212 ttgcatatattatgcattgtccatatcaactaagctaagctcac 16967255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 32944779 - 32944734
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 201  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||||    
T  32944779 ttgcatatattatgcattgtccataccaactaagctaagctcacaa 32944734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 43021647 - 43021689
Alignment:
Q  157 tgcatacaatatgcattgtccatatcaactaagctaagctcac 199  Q
    |||||| |||||||||||||| || ||||||||||||||||||    
T  43021647 tgcataaaatatgcattgtccctaccaactaagctaagctcac 43021689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 8253782 - 8253737
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 201  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  8253782 ttgcatatattatgcattgtccataccaactgagctaagctcacaa 8253737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 13054916 - 13054871
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 201  Q
    ||||||| | |||||||||||| || ||||||||||||||||||||    
T  13054916 ttgcatatattatgcattgtccctaccaactaagctaagctcacaa 13054871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 29701348 - 29701381
Alignment:
Q  166 tatgcattgtccatatcaactaagctaagctcac 199  Q
    |||||||||||||||||||||||| |||||||||    
T  29701348 tatgcattgtccatatcaactaagttaagctcac 29701381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 13778841 - 13778873
Alignment:
Q  166 tatgcattgtccatatcaactaagctaagctca 198  Q
    ||||||| |||||||||||||||||||||||||    
T  13778841 tatgcatcgtccatatcaactaagctaagctca 13778873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 26755648 - 26755616
Alignment:
Q  167 atgcattgtccatatcaactaagctaagctcac 199  Q
    |||||||||||||||||||| ||||||||||||    
T  26755648 atgcattgtccatatcaactgagctaagctcac 26755616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 10871912 - 10871955
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||||    
T  10871912 ttgcatacattatgcattgtccataccaactaaactaagctcac 10871955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 27718912 - 27718955
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||    
T  27718912 ttgcatatattatgcattgtccatatcaactgagctaagctcac 27718955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 30427774 - 30427729
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 201  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  30427774 ttgcatatattatgcattgtccataccaactgagctaagctcacaa 30427729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 44655027 - 44654994
Alignment:
Q  166 tatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||||||| ||||||||||||||||||||||    
T  44655027 tatgcattgtctatatcaactaagctaagctcac 44654994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 24485742 - 24485699
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||    
T  24485742 ttgcatatattatgcattgtccataccaactaagctaagctcac 24485699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Original strand, 39610359 - 39610402
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||    
T  39610359 ttgcatatattatgcattgtccatatcaactgagctaagctcac 39610402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 10515404 - 10515359
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 201  Q
    ||||||| | ||| |||||||||||||||||||| |||||||||||    
T  10515404 ttgcatatattattcattgtccatatcaactaagttaagctcacaa 10515359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 22394068 - 22394035
Alignment:
Q  166 tatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||||||||||||||||| ||||||||||||    
T  22394068 tatgcattgtccatatcaactgagctaagctcac 22394035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 36490611 - 36490568
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||    
T  36490611 ttgcatacattatgcattgtccataccaactaagttaagctcac 36490568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 16743302 - 16743347
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 201  Q
    ||||||| | |||||||| |||||||||||| ||||||||||||||    
T  16743302 ttgcatatattatgcattatccatatcaactgagctaagctcacaa 16743347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 19854608 - 19854563
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 201  Q
    ||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  19854608 ttgcatatattatgcattgtccataccaactgagctaagctcacaa 19854563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 39171398 - 39171431
Alignment:
Q  166 tatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||||||||||||||||| ||||||||||||    
T  39171398 tatgcattgtccatatcaactgagctaagctcac 39171431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 43374300 - 43374333
Alignment:
Q  166 tatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||||||||||||||||| ||||||||||||    
T  43374300 tatgcattgtccatatcaactgagctaagctcac 43374333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 9196246 - 9196214
Alignment:
Q  166 tatgcattgtccatatcaactaagctaagctca 198  Q
    |||||||||||||||||||||||| ||||||||    
T  9196246 tatgcattgtccatatcaactaagttaagctca 9196214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 9329353 - 9329313
Alignment:
Q  18 ataatggtaaccatctcaccttcttctgtaatgttattttt 58  Q
    |||||||||||| ||| |||||||||||| |||||||||||    
T  9329353 ataatggtaaccctcttaccttcttctgtgatgttattttt 9329313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 9383136 - 9383096
Alignment:
Q  18 ataatggtaaccatctcaccttcttctgtaatgttattttt 58  Q
    |||||||||||| ||| |||||||||||| |||||||||||    
T  9383136 ataatggtaaccctcttaccttcttctgtgatgttattttt 9383096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 20383531 - 20383487
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcaca 200  Q
    ||||||| | ||||||||||||||| ||||| |||||||||||||    
T  20383531 ttgcatatattatgcattgtccataccaactgagctaagctcaca 20383487  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 199
Target Start/End: Complemental strand, 33064029 - 33063986
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||    
T  33064029 ttgcatatattatgcattgtccatatcaactgagctaagctcac 33063986  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 9799438 - 9799471
Alignment:
Q  166 tatgcattgtccatatcaactaagctaagctcac 199  Q
    |||||||||||||| |||||||||||||||||||    
T  9799438 tatgcattgtccatttcaactaagctaagctcac 9799471  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 29734734 - 29734689
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaagctcacaa 201  Q
    ||||||| | ||||||||||||||||||||| |||||| |||||||    
T  29734734 ttgcatatattatgcattgtccatatcaactgagctaaactcacaa 29734689  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 41187485 - 41187518
Alignment:
Q  166 tatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||||||||||| ||||||||||||||||||    
T  41187485 tatgcattgtccataccaactaagctaagctcac 41187518  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 41204529 - 41204562
Alignment:
Q  166 tatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||||||||||| ||||||||||||||||||    
T  41204529 tatgcattgtccataccaactaagctaagctcac 41204562  T

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Target: scaffold1694 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1694
Description:

Target: scaffold1694; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 198 - 160
Alignment:
Q  156 ttgcatacaatatgcattgtccatatcaactaagctaag 194  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  198 ttgcatacattatgcattgtccatatcaactgagctaag 160  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 244512 - 244479
Alignment:
Q  166 tatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||||||||||||||||| ||||||||||||    
T  244512 tatgcattgtccatatcaactgagctaagctcac 244479  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 16130798 - 16130765
Alignment:
Q  166 tatgcattgtccatatcaactaagctaagctcac 199  Q
    ||||||||||||||| ||||||||||||||||||    
T  16130798 tatgcattgtccataccaactaagctaagctcac 16130765  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 24827085 - 24827048
Alignment:
Q  166 tatgcattgtccatatcaactaagctaagctcacaatg 203  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  24827085 tatgcattgtccatatcaactgagctaagctaacaatg 24827048  T

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