View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6517_high_16 (Length: 240)
Name: NF6517_high_16
Description: NF6517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6517_high_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 54159791 - 54159570
Alignment:
| Q |
19 |
gttccctcgtccttgaattttactgaacaatgtttgtaggagagtgatgggcttctcttgagggttttataattccttaatttgagaagggttttatgaa |
118 |
Q |
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| T |
54159791 |
gttccctcgtccttgaattttactgaacaatgtttgtaggagagtgatgggcttctcttgagggttttataattccttaatttgagaagggttttatgaa |
54159692 |
T |
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| Q |
119 |
tcaaagttgcgtcaatttatatcatgtgttactggtctgtgtatcttttaagtgtacttgacaatttatctgcaatattgcaatggattgacattaattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54159691 |
tcaaagttgcgtcaatttatatcatgtgttactggtctgtgtatcttttaagtgtacttgacaatttatctgcaatattgcaatggattgacattaattt |
54159592 |
T |
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| Q |
219 |
ttaaacatatattttatctttt |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
54159591 |
ttaaacatatattttatctttt |
54159570 |
T |
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