View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6517_high_2 (Length: 569)
Name: NF6517_high_2
Description: NF6517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6517_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 144 - 551
Target Start/End: Complemental strand, 29461791 - 29461381
Alignment:
| Q |
144 |
cagtctcagaaagaaagctcaaaagggaaatatccaattttggtacatttaattatacataatcctaattgaataaaagaatttgtgtaccaccatagtg |
243 |
Q |
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| T |
29461791 |
cagtctcagaaagaaagctcaaaagggaaatatccaattttggtacatttaattatacataatcctaattgaataaaagaatttgtgtaccaccatagtg |
29461692 |
T |
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| Q |
244 |
agaaaccatcaaaccaataaaaggttgaacattttttcttcttccaaataacgtgatattgtggtttttgaaaaaccttgaatttactcatgtttgggca |
343 |
Q |
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| T |
29461691 |
agaaaccatcaaaccaataaaaggttgaacattttttcttcttccaaataacatgatattgtggtttttaaaaaaccttgaatttactcatgtttgggca |
29461592 |
T |
|
| Q |
344 |
attcaagtcatagcat---aagnnnnnnnngtactgtcacaaacaaagaaacatatatagcagcataataagaatgaagtaactagttatgaacctgcaa |
440 |
Q |
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| T |
29461591 |
attcaagtcatagcataaaaaaaaaaaaaagtactgtcacaaacaaagaaacatatatagcagcataataagaatgaagtaactagttatgaacctgcaa |
29461492 |
T |
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| Q |
441 |
gtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctctt |
540 |
Q |
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| T |
29461491 |
gtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctctt |
29461392 |
T |
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| Q |
541 |
ggttggtcctt |
551 |
Q |
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| T |
29461391 |
ggttggtcctt |
29461381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 409 - 551
Target Start/End: Complemental strand, 29426256 - 29426114
Alignment:
| Q |
409 |
taagaatgaagtaactagttatgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctca |
508 |
Q |
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||||||||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29426256 |
taagaatgaggtaacttttaacgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctca |
29426157 |
T |
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| Q |
509 |
gcaaaaccatttaacccattaagtaacctcttggttggtcctt |
551 |
Q |
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| T |
29426156 |
gcaaaaccattaagaccattaagtaaccttttagttggtcctt |
29426114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 29461924 - 29461866
Alignment:
| Q |
11 |
cacagaccaagccattaaaacaagggcccttaggttagtgtcaccagaattgagttgaa |
69 |
Q |
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| T |
29461924 |
cacagaccaaaccattaaaacaagggcccttaggttagtgtcaccagaattgagttgaa |
29461866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 445 - 498
Target Start/End: Complemental strand, 29476656 - 29476603
Alignment:
| Q |
445 |
atcaagcaaagtggattttccagagccagaaggacccataatagccatgattct |
498 |
Q |
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|||||| | ||| ||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
29476656 |
atcaagaagagtagattttccagaaccagatggacccataatagccatgattct |
29476603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 491
Target Start/End: Complemental strand, 37290273 - 37290237
Alignment:
| Q |
455 |
gtggattttccagagccagaaggacccataatagcca |
491 |
Q |
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| T |
37290273 |
gtggattttccagagccagatggacccataatagcca |
37290237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 455 - 540
Target Start/End: Complemental strand, 36068412 - 36068327
Alignment:
| Q |
455 |
gtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaagtaacctctt |
540 |
Q |
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| T |
36068412 |
gtggttttgccacagccagaaggacccataacagccatgatcctaccaggttcagcaaaaccagttacaccatcaagtaacttctt |
36068327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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