View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6517_high_5 (Length: 528)

Name: NF6517_high_5
Description: NF6517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6517_high_5
NF6517_high_5
[»] chr6 (12 HSPs)
chr6 (34-249)||(10927827-10928036)
chr6 (49-249)||(27901177-27901374)
chr6 (118-249)||(2537016-2537148)
chr6 (134-249)||(32249941-32250056)
chr6 (135-227)||(16316672-16316764)
chr6 (156-247)||(23915527-23915618)
chr6 (134-203)||(2438854-2438923)
chr6 (134-203)||(3676380-3676449)
chr6 (430-491)||(14040926-14040987)
chr6 (39-98)||(16316591-16316650)
chr6 (49-102)||(2438773-2438826)
chr6 (38-98)||(23915441-23915501)
[»] chr1 (14 HSPs)
chr1 (38-249)||(50231488-50231693)
chr1 (134-249)||(14494751-14494866)
chr1 (39-249)||(29699092-29699299)
chr1 (34-249)||(9046258-9046463)
chr1 (142-230)||(8528195-8528283)
chr1 (131-249)||(9041180-9041298)
chr1 (53-187)||(43575131-43575262)
chr1 (119-193)||(20133027-20133102)
chr1 (126-247)||(49265902-49266022)
chr1 (39-211)||(237171-237339)
chr1 (39-98)||(14245988-14246047)
chr1 (39-88)||(20132967-20133016)
chr1 (342-370)||(37706310-37706338)
chr1 (342-370)||(43575413-43575441)
[»] chr3 (22 HSPs)
chr3 (34-249)||(35369035-35369247)
chr3 (39-249)||(22101886-22102093)
chr3 (39-249)||(3422539-3422746)
chr3 (118-244)||(22833257-22833384)
chr3 (39-249)||(22176833-22177041)
chr3 (131-245)||(28096251-28096365)
chr3 (131-249)||(7115970-7116088)
chr3 (39-249)||(44822178-44822386)
chr3 (39-202)||(35863591-35863750)
chr3 (66-249)||(53359448-53359630)
chr3 (38-95)||(26053753-26053810)
chr3 (147-202)||(22176487-22176542)
chr3 (128-247)||(34492032-34492151)
chr3 (144-249)||(7116577-7116678)
chr3 (147-202)||(22101542-22101597)
chr3 (39-86)||(7115880-7115927)
chr3 (171-249)||(26053630-26053709)
chr3 (39-87)||(22101595-22101643)
chr3 (186-230)||(51139646-51139690)
chr3 (342-378)||(21078409-21078445)
chr3 (39-87)||(22176540-22176588)
chr3 (118-150)||(26053712-26053744)
[»] chr5 (6 HSPs)
chr5 (38-249)||(1190358-1190563)
chr5 (39-249)||(28263731-28263939)
chr5 (46-203)||(28222014-28222168)
chr5 (39-98)||(38938569-38938628)
chr5 (177-243)||(38938655-38938721)
chr5 (136-207)||(3160861-3160932)
[»] chr7 (14 HSPs)
chr7 (40-249)||(9306598-9306804)
chr7 (34-249)||(11321183-11321394)
chr7 (40-249)||(9302160-9302366)
chr7 (39-248)||(20621163-20621370)
chr7 (39-230)||(35492154-35492342)
chr7 (118-247)||(47220959-47221089)
chr7 (46-249)||(9307645-9307842)
chr7 (39-98)||(9329796-9329855)
chr7 (135-202)||(41755438-41755505)
chr7 (46-98)||(9303207-9303259)
chr7 (131-229)||(47912075-47912173)
chr7 (144-199)||(39677845-39677898)
chr7 (159-202)||(9329696-9329739)
chr7 (50-98)||(41755355-41755403)
[»] scaffold0025 (1 HSPs)
scaffold0025 (39-249)||(3403-3610)
[»] chr4 (12 HSPs)
chr4 (34-249)||(38001407-38001619)
chr4 (118-249)||(54198283-54198413)
chr4 (39-249)||(5524980-5525187)
chr4 (66-249)||(9162565-9162746)
chr4 (39-249)||(3729443-3729651)
chr4 (39-247)||(44814470-44814676)
chr4 (39-249)||(12216918-12217126)
chr4 (39-202)||(44673181-44673341)
chr4 (39-202)||(11974625-11974786)
chr4 (39-219)||(10726352-10726529)
chr4 (39-219)||(10940121-10940298)
chr4 (341-370)||(26005819-26005848)
[»] chr2 (13 HSPs)
chr2 (39-249)||(7061820-7062027)
chr2 (131-249)||(35193436-35193554)
chr2 (39-245)||(43528401-43528603)
chr2 (131-249)||(309805-309923)
chr2 (131-249)||(13594472-13594590)
chr2 (39-249)||(44539437-44539645)
chr2 (153-249)||(25047960-25048056)
chr2 (172-249)||(2222037-2222114)
chr2 (39-245)||(27339463-27339659)
chr2 (39-98)||(35193325-35193384)
chr2 (39-88)||(13594630-13594679)
chr2 (341-370)||(21839360-21839389)
chr2 (46-98)||(2222172-2222224)
[»] chr8 (4 HSPs)
chr8 (118-244)||(5592680-5592807)
chr8 (46-230)||(24432209-24432391)
chr8 (39-98)||(24409599-24409658)
chr8 (146-202)||(26528235-26528291)
[»] scaffold0066 (2 HSPs)
scaffold0066 (118-245)||(56426-56554)
scaffold0066 (39-86)||(56614-56661)
[»] scaffold0990 (1 HSPs)
scaffold0990 (45-168)||(997-1117)
[»] scaffold0123 (2 HSPs)
scaffold0123 (142-207)||(17244-17309)
scaffold0123 (39-98)||(17143-17202)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 9e-59; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 34 - 249
Target Start/End: Complemental strand, 10928036 - 10927827
Alignment:
Q  34 agggaaacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggttacg 133  Q
    ||||||||||| || |||||||||||||||| ||||||||  ||||||||||||| ||||||||||||             |||||||||||||||||||    
T  10928036 agggaaacacagatatacaacataaaagcggctgataaaa--gtaacatgagtttttgttttgtgttatttttttttt---agattgatatgtggttacg 10927942  T
Q  134 gaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccg 233  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||| |    
T  10927941 gaggtaaaagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattggctaacagtaagaacaatttataaggaactg 10927842  T
Q  234 tgtgtaagttttctcc 249  Q
    ||||||| ||||||||    
T  10927841 tgtgtaa-ttttctcc 10927827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 49 - 249
Target Start/End: Original strand, 27901177 - 27901374
Alignment:
Q  49 tacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggttacggaggtaagagagggt 148  Q
    |||||||||||||||| ||||||||||||||||||||||| || |||||| |||           | ||||||| |||||||||  |||||| |||||||    
T  27901177 tacaacataaaagcggttgataaaaaagtaacatgagtttttgctttgtgctagttttttgt---gtgattgatctgtggttacataggtaaaagagggt 27901273  T
Q  149 taacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtgtaagttttctc 248  Q
    ||||| ||||||| | | |||||||||||||||||| |||||||||||||||||  ||   ||||||||| |||||||||||| ||||||||||||||||    
T  27901274 taacggggacgatcagtaacatggattagtaatccatgtgttattttataattggctagtcgtaagaacagttcataaggaactgtgtgtaagttttctc 27901373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 118 - 249
Target Start/End: Complemental strand, 2537148 - 2537016
Alignment:
Q  118 ttgatatgtggtta-cggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaa 216  Q
    ||||| |||||||| ||||||||| | |||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||  ||| ||||||||    
T  2537148 ttgatctgtggttaacggaggtaaaatagggttaacggggacgattagtgacatggattagtaacccacgtgttattttataattggctaaaagtaagaa 2537049  T
Q  217 caattcataaggaaccgtgtgtaagttttctcc 249  Q
    ||||||||||||||  |||  ||||||||||||    
T  2537048 caattcataaggaattgtgcttaagttttctcc 2537016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 134 - 249
Target Start/End: Original strand, 32249941 - 32250056
Alignment:
Q  134 gaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccg 233  Q
    ||||||| ||| |||||||   |||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||  |    
T  32249941 gaggtaaaagatggttaacagagacgattagtgacatggattagtaatctacgtgttattttataattggttaacagtaagaacaatttataaggaattg 32250040  T
Q  234 tgtgtaagttttctcc 249  Q
    || |||||||||||||    
T  32250041 tgggtaagttttctcc 32250056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 16316672 - 16316764
Alignment:
Q  135 aggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataag 227  Q
    |||||| ||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||||    
T  16316672 aggtaaaagagggttaacggagacgattagtgacatggattagtaatccacgtgttattttataattagctaacattaagaacaattcataag 16316764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 23915527 - 23915618
Alignment:
Q  156 gacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtgtaagttttct 247  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||  ||||| |||||||| ||||||| |||  |||||||||||||||    
T  23915527 gacgattagtgacatagattagtaatccacgtgttattttataattggctaacaataagaacagttcataaagaattgtgtgtaagttttct 23915618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 2438854 - 2438923
Alignment:
Q  134 gaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattga 203  Q
    ||||||| |||||||||||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  2438854 gaggtaaaagagggttaacggggacgattagtgacatgaattactaatccacgtgttattttataattga 2438923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 3676449 - 3676380
Alignment:
Q  134 gaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattga 203  Q
    ||||||| |||||||||||  ||||||||| ||| |||||||| |||||||||||||||| |||||||||    
T  3676449 gaggtaaaagagggttaacagggacgattagtgatatggattactaatccacgtgttattgtataattga 3676380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 430 - 491
Target Start/End: Complemental strand, 14040987 - 14040926
Alignment:
Q  430 gtgtcaacttgaactccttgtaacttagacactcttcagatggctaaaaaggcaatatgcag 491  Q
    ||||||||||||||||||| ||||||| |||||||||||||||  |||||||| ||||||||    
T  14040987 gtgtcaacttgaactccttataacttaaacactcttcagatggggaaaaaggccatatgcag 14040926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 16316591 - 16316650
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtg 98  Q
    |||||| |||||||||| |||| ||| ||||||||||||||||||||||| |||||||||    
T  16316591 aacacagatgtacaacaaaaaatcggctgataaaaaagtaacatgagtttttgttttgtg 16316650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 2438773 - 2438826
Alignment:
Q  49 tacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttag 102  Q
    |||||||||||||||| ||| |||||||||||||||  || |||||||||||||    
T  2438773 tacaacataaaagcggttgaaaaaaaagtaacatgaaattttgttttgtgttag 2438826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 23915441 - 23915501
Alignment:
Q  38 aaacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtg 98  Q
    ||||||| ||||||||||||||| ||   |||||||||||||||||| |||  ||||||||    
T  23915441 aaacacatatgtacaacataaaatcgaccgataaaaaagtaacatgacttttagttttgtg 23915501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 9e-56; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 38 - 249
Target Start/End: Complemental strand, 50231693 - 50231488
Alignment:
Q  38 aaacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggttacggagg 137  Q
    ||||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||            ||||||||||| |||||||||||    
T  50231693 aaacacagatgtacaacataaaagcggctgataaaaaagtaatatgagtttttgttttgtgttagtttttt------agattgatatgcggttacggagg 50231600  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
     || |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||| |||||||| ||| |||||    
T  50231599 aaaaagagggttaacgggaacgattattgacatggattagtaatccacgtgttattttataattggctaacagcaagaacagttcataagaaactgtgtg 50231500  T
Q  238 taagttttctcc 249  Q
    ||||||||||||    
T  50231499 taagttttctcc 50231488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 134 - 249
Target Start/End: Complemental strand, 14494866 - 14494751
Alignment:
Q  134 gaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccg 233  Q
    ||||||| ||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||  |    
T  14494866 gaggtaaaagagggttaacggagacgattagtgacatggattagtaatccacgtgttattttataattgactaacagtaagaacaatccataagaaattg 14494767  T
Q  234 tgtgtaagttttctcc 249  Q
    ||||||||||||||||    
T  14494766 tgtgtaagttttctcc 14494751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 39 - 249
Target Start/End: Original strand, 29699092 - 29699299
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||| ||||||||||||||| ||  | |||||||| |||||||||||| ||||||||| |||           ||| ||||| |||||||| |||| |    
T  29699092 aacacagatgtacaacataaaatcgc-taataaaaaaataacatgagtttttgttttgtgctagttttatgt---gagtttgatttgtggttaacggaag 29699187  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
    ||| ||| |||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||  ||| |    
T  29699188 taaaagatggttaacggggacgatcagtgacatggattagtaatccacgtgttattttataattggctaacagtaagaacaattcataaggaattgtgcg 29699287  T
Q  238 taagttttctcc 249  Q
    ||||||||||||    
T  29699288 taagttttctcc 29699299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 34 - 249
Target Start/End: Original strand, 9046258 - 9046463
Alignment:
Q  34 agggaaacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggttacg 133  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||||            ||||||||||||||||||||    
T  9046258 agggaaacacagatgtacaacataaaagcggctgatagaaaagtaacatgagtttttattttgtgtta-cttttttttttgagattgatatgtggttacg 9046356  T
Q  134 gagg-taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaacc 232  Q
    |||| ||| |||||||||||| ||||||| |||          |||||||||||||||||||||||||||  ||||| ||||||||||||  |||||||     
T  9046357 gagggtaaaagagggttaacggggacgatcatt----------agtaatccacgtgttattttataattggctaacaataagaacaattcgcaaggaact 9046446  T
Q  233 gtgtgtaagttttctcc 249  Q
    ||||||| |||||||||    
T  9046447 gtgtgtacgttttctcc 9046463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 8528283 - 8528195
Alignment:
Q  142 agagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaa 230  Q
    |||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||||||||    
T  8528283 agagggttaacagggacgatcattgacatggattagtaatccacgtgttattttataattggctagtagtaagaacaattcataaggaa 8528195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 131 - 249
Target Start/End: Complemental strand, 9041298 - 9041180
Alignment:
Q  131 acggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaa 230  Q
    |||||||||| ||||||||||||   ||||||| ||||||||||||| ||| ||||| ||||||||||||||  |||||| ||||||| |||||||||||    
T  9041298 acggaggtaaaagagggttaacggaaacgattaatgacatggattagcaattcacgtattattttataattggctaacagcaagaacagttcataaggaa 9041199  T
Q  231 ccgtgtgtaagttttctcc 249  Q
      || ||||||||||||||    
T  9041198 ttgtatgtaagttttctcc 9041180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 53 - 187
Target Start/End: Original strand, 43575131 - 43575262
Alignment:
Q  53 acataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggttacggaggtaagagagggttaac 152  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||            || |||||||||||||||  |||||| ||||||||||     
T  43575131 acataaaagcggctgataaaaaagtaacatgagtttttgttttgtgttagttttttgta---agtttgatatgtggttacataggtaaaagagggttaat 43575227  T
Q  153 gaggacgattattgacatggattagtaatccacgt 187  Q
    | ||||||||| |||||||||||||||||||||||    
T  43575228 ggggacgattactgacatggattagtaatccacgt 43575262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 20133027 - 20133102
Alignment:
Q  119 tgatatgtggtta-cggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttatt 193  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||  |||||||||||||||||| ||||||||||    
T  20133027 tgatatgtggttaacggaggtaaaagagggttaacgaggacgattggtgacatggattagtaatctacgtgttatt 20133102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 49266022 - 49265902
Alignment:
Q  126 tggttacggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcata 225  Q
    |||||| |||||||| |||||||||||| | || |||| |||||  |||||||||| |||| ||||||||||||||   ||| |||||||||| ||||||    
T  49266022 tggttatggaggtaa-agagggttaacgggaacaattagtgacactgattagtaattcacgcgttattttataattagctaatagtaagaacagttcata 49265924  T
Q  226 aggaaccgtgtgtaagttttct 247  Q
    ||||||  ||| ||||||||||    
T  49265923 aggaactatgtataagttttct 49265902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 211
Target Start/End: Complemental strand, 237339 - 237171
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngaga-ttgatatgtggtt-acggag 136  Q
    |||||| ||||||||||||||| ||| | |||||||||||| |||||||| ||||||||| |||           | || ||||| | ||||| ||||||    
T  237339 aacacagatgtacaacataaaatcggcttataaaaaagtaatatgagtttttgttttgtgctag-----ttttttgtgatttgatctatggttaacggag 237245  T
Q  137 gtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagt 211  Q
    |||| |||||||||| |  |||||||| ||||||||||||||||| ||||||||||||||||||||  |||||||    
T  237244 gtaaaagagggttaaaggagacgattagtgacatggattagtaat-cacgtgttattttataattggctaacagt 237171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 14246047 - 14245988
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtg 98  Q
    |||||| ||||| || |||||||||| ||||||||||||||||||||||| |||||||||    
T  14246047 aacacagatgtataatataaaagcggctgataaaaaagtaacatgagtttttgttttgtg 14245988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 20132967 - 20133016
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagttt 88  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  20132967 aacacacatgtacaacataaaatcggctgataaaaaagtaacatgagttt 20133016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 370
Target Start/End: Original strand, 37706310 - 37706338
Alignment:
Q  342 tgttgaaaggggtaattttctttatatat 370  Q
    |||||||||||||||||||||||||||||    
T  37706310 tgttgaaaggggtaattttctttatatat 37706338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 370
Target Start/End: Original strand, 43575413 - 43575441
Alignment:
Q  342 tgttgaaaggggtaattttctttatatat 370  Q
    |||||||||||||||||||||||||||||    
T  43575413 tgttgaaaggggtaattttctttatatat 43575441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 34 - 249
Target Start/End: Complemental strand, 35369247 - 35369035
Alignment:
Q  34 agggaaacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggttacg 133  Q
    ||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| |||           ||| ||||| ||||||||||    
T  35369247 agggaaacacatatgtacaacataaaaacggctgataaaaaagtaacatgagtttttgttttgtgctagttttttgt---gagtttgatctgtggttacg 35369151  T
Q  134 gaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccg 233  Q
    ||||||| ||| |||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||  |||||||||||||| |||||||||||| |    
T  35369150 gaggtaaaagatggttaatggggacgattagtgacatggattagtaatccatgtgttattttataattggctaacagtaagaacagttcataaggaactg 35369051  T
Q  234 tgtgtaagttttctcc 249  Q
    ||||||||||||||||    
T  35369050 tgtgtaagttttctcc 35369035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 39 - 249
Target Start/End: Complemental strand, 22102093 - 22101886
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||| ||| ||||| ||| |||           ||| ||||| |||||||| ||||||    
T  22102093 aacacaaatgtacaacataaa-gcggctgataaaaaagtaacatgactttttgtttagtgctagttttttgt---gagtttgatttgtggttaacggagg 22101998  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
    ||| |||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||| |  |||||||||||||| |||||||| |||||||||    
T  22101997 taaaagagggttaatggggacgattagtgacatggattagtaatccatgtgttattttataataggctaacagtaagaacagttcataagaaaccgtgtg 22101898  T
Q  238 taagttttctcc 249  Q
    ||||||||||||    
T  22101897 taagttttctcc 22101886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 39 - 249
Target Start/End: Original strand, 3422539 - 3422746
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggttacggaggt 138  Q
    |||||| ||||||||| |||||| || ||||||||||||||||||||||| ||||||||| |||           ||| |||||||||| ||||||||||    
T  3422539 aacacagatgtacaacgtaaaagtggctgataaaaaagtaacatgagtttttgttttgtgctagttttttgt---gagtttgatatgtgattacggaggt 3422635  T
Q  139 aagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtgt 238  Q
    || |||||| ||||| | |||||||  ||||||||||| |||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||  |||||    
T  3422636 aaaagagggataacgggtacgattaaagacatggattaataatccacatgttactttataattgactaacagtaagaacagttcataaggaactatgtgt 3422735  T
Q  239 aagttttctcc 249  Q
    |||||||||||    
T  3422736 aagttttctcc 3422746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 22833384 - 22833257
Alignment:
Q  118 ttgatatgtggtta-cggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaa 216  Q
    |||||||||||||| | ||||||| || |||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22833384 ttgatatgtggttaacagaggtaaaagtgggtcaacgagaacgattagtgacatggattagtaatccacgtgttattttataattgactaacagtaagaa 22833285  T
Q  217 caattcataaggaaccgtgtgtaagttt 244  Q
     | ||||||||||||||| |||||||||    
T  22833284 tagttcataaggaaccgtatgtaagttt 22833257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 39 - 249
Target Start/End: Complemental strand, 22177041 - 22176833
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| ||| | |           ||| ||||| |||| ||| ||||||    
T  22177041 aacacaaatgtacaacataaaagcggctgataaaaaagtaacatgactttttgtttagtgctggttttttgt---gagtttgatttgtgattaacggagg 22176945  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
    ||| | |||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||| |  |||||||||||||| |||||||  ||| |||||    
T  22176944 taaaaaagggttaatggggacgattagtgacatggattagtaatccatgtgttattttataataggctaacagtaagaacagttcataaaaaactgtgtg 22176845  T
Q  238 taagttttctcc 249  Q
    ||||||||||||    
T  22176844 taagttttctcc 22176833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 131 - 245
Target Start/End: Complemental strand, 28096365 - 28096251
Alignment:
Q  131 acggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaa 230  Q
    ||||||| || |||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||  ||||| ||||||||||||| ||||||    
T  28096365 acggagggaaaagagggttaacgaggacgattagtgacatggattagtaatcaacatgttattttataattggctaacactaagaacaattcacaaggaa 28096266  T
Q  231 ccgtgtgtaagtttt 245  Q
      ||| |||||||||    
T  28096265 ttgtgcgtaagtttt 28096251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 7115970 - 7116088
Alignment:
Q  131 acggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaa 230  Q
    |||||||||| ||||| |||||| |||| |||| | ||||||| ||||||| |||||||||||||||||||   |||||||||||||| |||||||||||    
T  7115970 acggaggtaaaagaggattaacggggacaattagtaacatggactagtaatacacgtgttattttataatttgctaacagtaagaacagttcataaggaa 7116069  T
Q  231 ccgtgtgtaagttttctcc 249  Q
      |||||||||||||||||    
T  7116070 ttgtgtgtaagttttctcc 7116088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 39 - 249
Target Start/End: Complemental strand, 44822386 - 44822178
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||| || ||||||| |||| ||| ||||||||||||||||||||||| ||||||||| |||            || ||||| | |||||| | || |    
T  44822386 aacacagatctacaacaaaaaatcggctgataaaaaagtaacatgagtttatgttttgtgctagttttttgta---agtttgatctttggttaacagatg 44822290  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
    ||| |||||||||||| ||||||||| ||||||| |||||||||||| ||||| |||||||||||  ||||| |||||||||||||||| ||   |||||    
T  44822289 taaaagagggttaacggggacgattagtgacatgaattagtaatccatgtgttgttttataattggctaacaataagaacaattcataaagagttgtgtg 44822190  T
Q  238 taagttttctcc 249  Q
    ||||||||||||    
T  44822189 taagttttctcc 44822178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 35863591 - 35863750
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggttacggaggt 138  Q
    |||||| | |||||||||||||  || ||||||||||||||||||||||| ||||||||| |||           ||| |||||||||||| ||| || |    
T  35863591 aacacatacgtacaacataaaaaaggctgataaaaaagtaacatgagtttttgttttgtgctagtttcttgt---gagtttgatatgtggt-acgaagat 35863686  T
Q  139 aagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattg 202  Q
    |  ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35863687 ataagatggttaacggggacgattagtgacatggattagtaatccacgtgttattttataattg 35863750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 66 - 249
Target Start/End: Complemental strand, 53359630 - 53359448
Alignment:
Q  66 tgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtt-acggaggtaagagagggttaacgaggacgattat 164  Q
    ||||||||||||||||||||||| ||||||||| |||           ||| ||||  ||||||| |||||||||| |||||||||||| ||| |||||     
T  53359630 tgataaaaaagtaacatgagtttttgttttgtgctag--tttttttctgagtttgacttgtggttaacggaggtaaaagagggttaacggggatgattag 53359533  T
Q  165 tgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtgtaagttttctcc 249  Q
    ||||||| |||| |||| |||||| |||||||||||||   ||| ||||||||||||||||| |||  ||| | |||||||||||    
T  53359532 tgacatgaattaataattcacgtgctattttataattggccaactgtaagaacaattcataaagaattgtgcgaaagttttctcc 53359448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 26053810 - 26053753
Alignment:
Q  38 aaacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgtttt 95  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  26053810 aaacacagatgtacaacataaaagcggctgataaaaaagtaacatgagtttttgtttt 26053753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 22176542 - 22176487
Alignment:
Q  147 gttaacgaggacgattattgacatggattagtaatccacgtgttattttataattg 202  Q
    ||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||    
T  22176542 gttaacgtggacgattagtgacatggattactaatccacgtgttattttataattg 22176487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 34492151 - 34492032
Alignment:
Q  128 gttacggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataag 227  Q
    |||||| |||||| |||| |||||||   || |||| ||||||||||||||||| |||||||||||||||||||    ||||||||||||| ||| |||     
T  34492151 gttacgaaggtaaaagagagttaacggaaactattagtgacatggattagtaattcacgtgttattttataattagccaacagtaagaacagttcttaaa 34492052  T
Q  228 gaaccgtgtgtaagttttct 247  Q
    ||||  ||| ||||||||||    
T  34492051 gaactatgtataagttttct 34492032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 249
Target Start/End: Original strand, 7116577 - 7116678
Alignment:
Q  144 agggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtgtaagtt 243  Q
    |||||||||  |||| |||| ||||||| || | |||| ||||||||||||||||||||| ||||    ||||||||||||||||||  ||||| |||||    
T  7116577 agggttaaccgggacaattagtgacatgaatcattaattcacgtgttattttataattgactaac----agaacaattcataaggaattgtgtggaagtt 7116672  T
Q  244 ttctcc 249  Q
    ||||||    
T  7116673 ttctcc 7116678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 22101597 - 22101542
Alignment:
Q  147 gttaacgaggacgattattgacatggattagtaatccacgtgttattttataattg 202  Q
    |||||||  |||||||| |||||||||||| |||||||||||||||||||||||||    
T  22101597 gttaacgttgacgattagtgacatggattactaatccacgtgttattttataattg 22101542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 7115880 - 7115927
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagt 86  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||||    
T  7115880 aacacagatgtacaacataaaatcggctgataaaaaagtaacatgagt 7115927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 26053709 - 26053630
Alignment:
Q  171 ggattagtaatccacgtgttattttataattgattaacagtaa-gaacaattcataaggaaccgtgtgtaagttttctcc 249  Q
    ||||||||||||||| |||||||||||||||| || ||| ||| ||| |||||||||| |||  ||| ||||||||||||    
T  26053709 ggattagtaatccacatgttattttataattggtttacaataaggaataattcataagaaactttgtataagttttctcc 26053630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 22101643 - 22101595
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtt 87  Q
    ||||||||||| ||| |||||||||  ||||||||||||||||||||||    
T  22101643 aacacaaatgtgcaaaataaaagcgattgataaaaaagtaacatgagtt 22101595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 51139646 - 51139690
Alignment:
Q  186 gtgttattttataattgattaacagtaagaacaattcataaggaa 230  Q
    |||||||||||||||||  |||||||||||||| |||||||||||    
T  51139646 gtgttattttataattggctaacagtaagaacagttcataaggaa 51139690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 21078445 - 21078409
Alignment:
Q  342 tgttgaaaggggtaattttctttatatattatagata 378  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  21078445 tgttgaaaggggtagttttctttatatagtatagata 21078409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 22176588 - 22176540
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtt 87  Q
    |||||| |||| ||| |||||||||  ||||||||||||||||||||||    
T  22176588 aacacagatgtgcaaaataaaagcgattgataaaaaagtaacatgagtt 22176540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 26053744 - 26053712
Alignment:
Q  118 ttgatatgtggttacggaggtaagagagggtta 150  Q
    ||||||||||||||||||||||| |||||||||    
T  26053744 ttgatatgtggttacggaggtaaaagagggtta 26053712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 38 - 249
Target Start/End: Complemental strand, 1190563 - 1190358
Alignment:
Q  38 aaacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggttacggagg 137  Q
    ||||||| ||||||||||||||||||| |||||||||||||| |||| ||| | ||  |||||||            |||||||||||| ||||||||||    
T  1190563 aaacacatatgtacaacataaaagcggctgataaaaaagtaatatgaatttttatt--gtgttagtttttttt----agattgatatgtagttacggagg 1190470  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
    ||| |||||||||||| |||||||| |||||||||||||||||| || |||||||||||||||||  ||||||||||||||||||||||||||| |||||    
T  1190469 taaaagagggttaacggggacgattgttgacatggattagtaattcatgtgttattttataattggctaacagtaagaacaattcataaggaactgtgtg 1190370  T
Q  238 taagttttctcc 249  Q
    ||||||||||||    
T  1190369 taagttttctcc 1190358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 39 - 249
Target Start/End: Original strand, 28263731 - 28263939
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||| ||||||||||||||| ||| ||||||||||| ||||| ||||| ||||||||| |||           ||| |||||||||||||| | ||||    
T  28263731 aacacagatgtacaacataaaatcggctgataaaaaagaaacataagtttttgttttgtgctagttttttgt---gagtttgatatgtggttaacagagg 28263827  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
    ||| |||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||  ||||| |||||| | |||||||||||  ||| |    
T  28263828 taaaagagagttaacggggacgattagtgacatgaattagtaatccacgtgttattttataattggctaacactaagaatagttcataaggaattgtgcg 28263927  T
Q  238 taagttttctcc 249  Q
    ||||||||||||    
T  28263928 taagttttctcc 28263939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 203
Target Start/End: Complemental strand, 28222168 - 28222014
Alignment:
Q  46 atgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtt-acggaggtaagaga 144  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| ||||||||| |||           ||| ||||| | ||||| ||| |||||| |||    
T  28222168 atgtacaacattaaagcggctgataaaaaagtaacatgagtttttgttttgtgctag---ttttttgtgagtttgatctttggttaacgaaggtaaaaga 28222072  T
Q  145 gggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattga 203  Q
    |||||||| || ||  ||| |||||||||||| |||||||| |||||||||||||||||    
T  28222071 gggttaac-agtacagttagtgacatggattactaatccacatgttattttataattga 28222014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 38938569 - 38938628
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtg 98  Q
    |||||| ||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  38938569 aacacagatgtacaacataaaaccggctgataaaaaagtaacatgagtttttgttttgtg 38938628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 38938655 - 38938721
Alignment:
Q  177 gtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtgtaagtt 243  Q
    ||||||||| ||||||||||||||||  |||||||||||||| |||||||||||  |||||||||||    
T  38938655 gtaatccacatgttattttataattggctaacagtaagaacagttcataaggaatagtgtgtaagtt 38938721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 3160861 - 3160932
Alignment:
Q  136 ggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaa 207  Q
    ||||| ||||||||||||  |  ||||| ||| |||||||| |||| ||| |||||||||||||||||||||    
T  3160861 ggtaaaagagggttaacggagctgattagtgatatggattactaattcacatgttattttataattgattaa 3160932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 40 - 249
Target Start/End: Complemental strand, 9306804 - 9306598
Alignment:
Q  40 acacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggttacggaggta 139  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||            ||| ||||||||||||||||| ||||    
T  9306804 acactaatgtacaacataaaagcggctgataaaaaagtaacatgagtttttgttttgtgcta---attttttgtgagtttgatatgtggttacggtggta 9306708  T
Q  140 agagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtgta 239  Q
    | ||||||||||| | |||||||| | |||||||||| ||||||||| |||||||||||| |   |||||||||||||| ||||||||||||  ||||||    
T  9306707 aaagagggttaacaatgacgattagttacatggattattaatccacgagttattttataactagctaacagtaagaacagttcataaggaactatgtgta 9306608  T
Q  240 agttttctcc 249  Q
    ||||||||||    
T  9306607 agttttctcc 9306598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 34 - 249
Target Start/End: Original strand, 11321183 - 11321394
Alignment:
Q  34 agggaaacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggttacg 133  Q
    ||||||||||| |||||||||||||||| || | ||||||||||||||||  ||| | ||||||| |||           ||| ||||| ||||||||||    
T  11321183 agggaaacacagatgtacaacataaaagtggcttataaaaaagtaacatggatttttattttgtgctagtttttgt----gagtttgatctgtggttacg 11321278  T
Q  134 gaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccg 233  Q
    ||||||| |||||||||| | ||||||||| ||||||| ||||||||| || |||||||||||||||||  |||||||||||||| || ||||| ||| |    
T  11321279 gaggtaaaagagggttaatggggacgattagtgacatgaattagtaattcatgtgttattttataattggctaacagtaagaacagttaataagaaactg 11321378  T
Q  234 tgtgtaagttttctcc 249  Q
    ||||||||||||||||    
T  11321379 tgtgtaagttttctcc 11321394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 40 - 249
Target Start/End: Complemental strand, 9302366 - 9302160
Alignment:
Q  40 acacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggttacggaggta 139  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||  ||            ||| ||||||||||||||||| ||||    
T  9302366 acactaatgtacaacataaaagcggctgataaaaaagtaacatgagtttttgttttgttcta---attttttgtgagtttgatatgtggttacggtggta 9302270  T
Q  140 agagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtgta 239  Q
    | ||||||||||| | |||||||| | |||||||||| ||||||||| |||||||||||| |   |||| ||||||||| ||||||||||||  ||||||    
T  9302269 aaagagggttaacaatgacgattagttacatggattattaatccacgagttattttataactagctaactgtaagaacagttcataaggaactatgtgta 9302170  T
Q  240 agttttctcc 249  Q
    ||||||||||    
T  9302169 agttttctcc 9302160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 39 - 248
Target Start/End: Original strand, 20621163 - 20621370
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| ||||||||| |||           ||| ||||| |||||||| ||||||    
T  20621163 aacacagatgtacaacataaaatcggctgataaaaaggtaacttgagtttttgttttgtgctagttttttgt---gagtttgatttgtggttaacggagg 20621259  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
    ||| |||  ||||||| ||||||||| |||||||||||||||||| || ||||||||||||||||  ||| ||||||||||||||||||||||  |||||    
T  20621260 taaaagaaagttaacggggacgattagtgacatggattagtaatctacttgttattttataattgcctaatagtaagaacaattcataaggaattgtgtg 20621359  T
Q  238 taagttttctc 248  Q
    |||||||||||    
T  20621360 taagttttctc 20621370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 39 - 230
Target Start/End: Complemental strand, 35492342 - 35492154
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||||||| |||           ||| ||||| | |||||| ||||||    
T  35492342 aacacaaatgtacaacacaaaatcggctgataaaaaagtaacatgagtttttgttttgtgctagttttttgt---gagcttgatctatggttaacggagg 35492246  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaa 230  Q
    ||| | |||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||||||||  ||| |||||||||| |||||||||||    
T  35492245 taaaa-agggttaacgaggatgattagtgacatgaattagtaatccacatgttattttataattggctaatagtaagaacagttcataaggaa 35492154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 47221089 - 47220959
Alignment:
Q  118 ttgatatgtggtta-cggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaa 216  Q
    |||||||| ||||| ||||||||| ||||||||| |  |||| |||| ||||||| ||||||||| ||||||||||||||||| ||  ||||||||||||    
T  47221089 ttgatatgaggttaacggaggtaaaagagggttagctgggacaattagtgacatgaattagtaattcacgtgttattttataactggctaacagtaagaa 47220990  T
Q  217 caattcataaggaaccgtgtgtaagttttct 247  Q
    ||||||||||||||  |||||| ||||||||    
T  47220989 caattcataaggaattgtgtgtgagttttct 47220959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 46 - 249
Target Start/End: Original strand, 9307645 - 9307842
Alignment:
Q  46 atgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggaggtaagaga 144  Q
    ||||||||||||||| ||| | ||||||||||||||||||||| ||||||||| |||           ||| ||||| |||||||| ||||||||| |||    
T  9307645 atgtacaacataaaatcggctaataaaaaagtaacatgagtttttgttttgtgctagtttttt-----gagtttgatttgtggttaacggaggtaaaaga 9307739  T
Q  145 gggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtgtaagttt 244  Q
    ||||||||| ||||||| | ||||||||||||||||| |||||| ||||||| |||||  ||||| |||||| | |||||||||||  |||| ||| |||    
T  9307740 gggttaacggggacgat-agtgacatggattagtaatgcacgtgctatttta-aattggctaacaataagaatagttcataaggaattgtgtataaattt 9307837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 9329855 - 9329796
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtg 98  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||    
T  9329855 aacacaaatgtacaacataaaaacggctgataaaaaagtaacatgagtttttattttgtg 9329796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 41755438 - 41755505
Alignment:
Q  135 aggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattg 202  Q
    |||||| |||||||||||| ||||||||  ||||||| ||||||||||||| |||||||||| |||||    
T  41755438 aggtaaaagagggttaacggggacgattggtgacatgaattagtaatccacatgttattttacaattg 41755505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 9303207 - 9303259
Alignment:
Q  46 atgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtg 98  Q
    ||||||||||||||| ||| | ||||||||||||||||||||| |||||||||    
T  9303207 atgtacaacataaaatcggctaataaaaaagtaacatgagtttttgttttgtg 9303259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 229
Target Start/End: Complemental strand, 47912173 - 47912075
Alignment:
Q  131 acggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataagga 229  Q
    ||||| |||| | |||||||||   ||| |||| |||| |||||||||||||||| ||||||||| ||||||  | ||| |||||||||||||| ||||    
T  47912173 acggatgtaaaatagggttaacagagacaattagtgacttggattagtaatccacatgttattttttaattggctgacaataagaacaattcattagga 47912075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 39677898 - 39677845
Alignment:
Q  144 agggttaacgaggacgattattgacatggattagtaatccacgtgttattttataa 199  Q
    |||||||||||||| ||| | ||||||||||||||||||||  |||||||||||||    
T  39677898 agggttaacgaggatgatcagtgacatggattagtaatcca--tgttattttataa 39677845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 9329739 - 9329696
Alignment:
Q  159 gattattgacatggattagtaatccacgtgttattttataattg 202  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||    
T  9329739 gattaatgacatggattactaatccacatgttattttataattg 9329696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 41755355 - 41755403
Alignment:
Q  50 acaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtg 98  Q
    ||||| |||||  |||||||||||||||||||||||||| | |||||||    
T  41755355 acaacttaaaattggatgataaaaaagtaacatgagtttttattttgtg 41755403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 39 - 249
Target Start/End: Original strand, 3403 - 3610
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||| ||||||||||||||| ||| |||||||||| |||||||||||| ||||||||| |||           ||| ||||| |||||||| ||||||    
T  3403 aacacagatgtacaacataaaatcggctgataaaaaactaacatgagtttttgttttgtgctagtttttgt----gagtttgatgtgtggttaacggagg 3498  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
    ||| |||||||||||  ||||||||| ||| |||||||||||||||||||||||||||||||||   |||| ||||||||| |||||||||||  |||||    
T  3499 taaaagagggttaacatggacgattagtgatatggattagtaatccacgtgttattttataattagctaacggtaagaacagttcataaggaaatgtgtg 3598  T
Q  238 taagttttctcc 249  Q
    ||||||||||||    
T  3599 taagttttctcc 3610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 34 - 249
Target Start/End: Complemental strand, 38001619 - 38001407
Alignment:
Q  34 agggaaacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggttacg 133  Q
    |||| |||||||||||||||||| ||||||| |||||||||||||| |||| ||| |||| | || |||           ||| ||||| |||||||||     
T  38001619 aggggaacacaaatgtacaacattaaagcggctgataaaaaagtaatatgaatttttgttctatgctagttttttgt---gagtttgatctgtggttaca 38001523  T
Q  134 gaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccg 233  Q
    ||||||| | |||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||  |    
T  38001522 gaggtaaaatagggttaacggggatgattagtgacatggattagtaatccatgtgttattttataattgactaacagtaagaacagttcataaggaattg 38001423  T
Q  234 tgtgtaagttttctcc 249  Q
    || |||||||||||||    
T  38001422 tgcgtaagttttctcc 38001407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 118 - 249
Target Start/End: Original strand, 54198283 - 54198413
Alignment:
Q  118 ttgatatgtggttacggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaac 217  Q
    ||||||||| ||||||||||||| |||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  54198283 ttgatatgttgttacggaggtaaaagagggttaacg-ggatgattagtgacatggattagtaatccacgtgttattttataattggctaacattaagaac 54198381  T
Q  218 aattcataaggaaccgtgtgtaagttttctcc 249  Q
    | |||||||| ||| |||||||||||||||||    
T  54198382 atttcataagaaactgtgtgtaagttttctcc 54198413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 39 - 249
Target Start/End: Complemental strand, 5525187 - 5524980
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| |||           ||| ||||| |||||||| ||||||    
T  5525187 aacacagatgtacaacataaaatcggctgataaaaaagtaacatgagtttttgttttgtgctagttttttgt---gagtttgatttgtggttaacggagg 5525091  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattga-ttaacagtaagaacaattcataaggaaccgtgt 236  Q
    ||| |||| ||||||| ||||||  | |||||||||||||||||| || ||||||||||||||||  |||||||||||||||  ||||||||||  ||||    
T  5525090 taaaagagagttaacggggacga--agtgacatggattagtaatctacttgttattttataattgggttaacagtaagaacagctcataaggaattgtgt 5524993  T
Q  237 gtaagttttctcc 249  Q
    |||||||||||||    
T  5524992 gtaagttttctcc 5524980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 66 - 249
Target Start/End: Original strand, 9162565 - 9162746
Alignment:
Q  66 tgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggaggtaagagagggttaacgaggacgattat 164  Q
    ||||||||||||||||||||||| ||||||||| |||           ||| ||||| |||||||| |||| |||| |||||||||||| ||| |||||     
T  9162565 tgataaaaaagtaacatgagtttttgttttgtgctagttttttgt---gagtttgatttgtggttaacggatgtaaaagagggttaacgtggaagattaa 9162661  T
Q  165 tgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtgtaagttttctcc 249  Q
    |||||||||||| |||||||||||||||||||||||||   |||||||||||||||||||||||||  ||| |||||||||||||    
T  9162662 tgacatggattattaatccacgtgttattttataattggcaaacagtaagaacaattcataaggaattgtgcgtaagttttctcc 9162746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 39 - 249
Target Start/End: Complemental strand, 3729651 - 3729443
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||| ||||||||||||||  ||| || |||||||||||||||||||| ||||||||| |||           ||| ||||| | |||||| ||||||    
T  3729651 aacacagatgtacaacataaagtcggttggtaaaaaagtaacatgagtttttgttttgtgctagttttttgt---gagtttgatctatggttaacggagg 3729555  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
    ||| |||||||||||  ||||||||| ||||||| ||||||||||||| ||||||||||||||||| | | |||||||||| |||||||||||  |||||    
T  3729554 taaaagagggttaacatggacgattagtgacatgtattagtaatccacatgttattttataattgacttagagtaagaacagttcataaggaattgtgtg 3729455  T
Q  238 taagttttctcc 249  Q
    || |||||||||    
T  3729454 tatgttttctcc 3729443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 44814676 - 44814470
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||| ||||||||||||||| ||| ||||| ||||| ||||||||||| ||||||||| |||           ||| ||||| | |||||| ||||||    
T  44814676 aacacagatgtacaacataaaatcggttgatagaaaagaaacatgagtttttgttttgtgctagttttttgt---gagtttgatctatggttaacggagg 44814580  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
    ||| |||||||||||| |||| |||| |||||| ||||||||||| |||||||||||||||||||  |||||||||||||| ||||||| |||  |||||    
T  44814579 taaaagagggttaacggggacaattagtgacatagattagtaatctacgtgttattttataattggctaacagtaagaacagttcataaagaattgtgtg 44814480  T
Q  238 taagttttct 247  Q
     |||||||||    
T  44814479 gaagttttct 44814470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 39 - 249
Target Start/End: Complemental strand, 12217126 - 12216918
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||| ||||||||||||||| | | ||||||||||||||||| ||||| ||||||||| ||            ||| ||||| |||||||| |  |||    
T  12217126 aacacatatgtacaacataaaatctgctgataaaaaagtaacataagtttttgttttgtgcta---attttttgtgagtttgatttgtggttaacatagg 12217030  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
    ||| ||||||||||| || || |||| ||||||||||||||||||||| ||||||||||||||||  || || ||||||||  || |||||||  |||||    
T  12217029 taaaagagggttaacaagaacaattactgacatggattagtaatccacatgttattttataattggctatcaataagaacagatcttaaggaattgtgtg 12216930  T
Q  238 taagttttctcc 249  Q
    ||||||||||||    
T  12216929 taagttttctcc 12216918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 44673181 - 44673341
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggttacggaggt 138  Q
    |||||| ||||||||||||||||||| ||||||||||||  ||||||||| |||||||||  |            ||| ||||| |||||||||||||||    
T  44673181 aacacagatgtacaacataaaagcggttgataaaaaagttgcatgagtttttgttttgtgcca---cttttttgtgagtttgatctgtggttacggaggt 44673277  T
Q  139 aagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattg 202  Q
    || |||||||||||| | || |||| |||| || ||||||||| |||||||||| |||||||||    
T  44673278 aaaagagggttaacgggaacaattagtgacgtgaattagtaattcacgtgttatcttataattg 44673341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 11974625 - 11974786
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtt-acggagg 137  Q
    |||||| ||||||| |||||||||||||||||| ||| |||||||||||| ||||||||| |||           ||| ||||| | ||||| |||||||    
T  11974625 aacacagatgtacagcataaaagcggatgataagaaaataacatgagtttttgttttgtgctag---ttttttgtgagtttgatctttggttaacggagg 11974721  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattg 202  Q
    ||| |||| |||||||  |||||||| || |||| |||| ||||||| |||||||||||||||||    
T  11974722 taaaagagagttaacggagacgattagtggcatgaattactaatccatgtgttattttataattg 11974786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 219
Target Start/End: Complemental strand, 10726529 - 10726352
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||||||||| | ||||||| |||           ||| |||||||||||||| |  | |    
T  10726529 aacacagatgtacaacataaaatcgc-tgataaaaaagtaacatgagtttttattttgtgctagttttttgt---gagtttgatatgtggttaacaaaag 10726434  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaa 219  Q
     || |||||||||| | ||||||||  |||||| |||||||||||||| ||||||| |||||||   ||||| |||||||||    
T  10726433 caaaagagggttaatggggacgatttatgacatagattagtaatccacatgttattctataatttggtaacaataagaacaa 10726352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 219
Target Start/End: Complemental strand, 10940298 - 10940121
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||| ||||||||||||||| ||  ||||||||||||||||||||||| | ||||||| |||           ||| |||||||||||||| |  | |    
T  10940298 aacacagatgtacaacataaaatcgc-tgataaaaaagtaacatgagtttttattttgtgctagttttttgt---gagtttgatatgtggttaacaaaag 10940203  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaa 219  Q
     || |||||||||| | ||||||||  |||||| |||||||||||||| ||||||| |||||||   ||||| |||||||||    
T  10940202 caaaagagggttaatggggacgatttatgacatagattagtaatccacatgttattctataatttggtaacaataagaacaa 10940121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 370
Target Start/End: Complemental strand, 26005848 - 26005819
Alignment:
Q  341 atgttgaaaggggtaattttctttatatat 370  Q
    ||||||||||||||||||||||||||||||    
T  26005848 atgttgaaaggggtaattttctttatatat 26005819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 39 - 249
Target Start/End: Complemental strand, 7062027 - 7061820
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||| ||||||||||||||| ||| ||||||||| ||||||||||||| ||||||||| |||           ||| ||||||||||| || ||||||    
T  7062027 aacacagatgtacaacataaaatcggttgataaaaaggtaacatgagtttttgttttgtgctagttttttgt---gagtttgatatgtggataacggagg 7061931  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
    ||| ||||| |||||||||||||||| ||| ||| |||||||||||| |||||||||||||||||| |||||||||||||| |||||||| ||  |||||    
T  7061930 taaaagagg-ttaacgaggacgattagtgatatgaattagtaatccatgtgttattttataattgactaacagtaagaacagttcataagaaattgtgtg 7061832  T
Q  238 taagttttctcc 249  Q
    ||||||||||||    
T  7061831 taagttttctcc 7061820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 131 - 249
Target Start/End: Original strand, 35193436 - 35193554
Alignment:
Q  131 acggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaa 230  Q
    |||||||||| |||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||    
T  35193436 acggaggtaaaagagggttaacggggacgattagtgacatggattagtaatccacatgttattttataattgactaacagtaagaacaattcataaagaa 35193535  T
Q  231 ccgtgtgtaagttttctcc 249  Q
      ||||||| |||||||||    
T  35193536 ttgtgtgtaggttttctcc 35193554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 39 - 245
Target Start/End: Complemental strand, 43528603 - 43528401
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||| ||||||||||||||| ||| ||||||||||||||||||| ||| ||||||||| |||           ||| |||||||||||||| ||||||    
T  43528603 aacacagatgtacaacataaaatcggttgataaaaaagtaacatgaatttttgttttgtgctagtttttt-----gagtttgatatgtggttaacggagg 43528509  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
    ||| ||||||||||||  |||||||| ||||||||||||||||| ||| ||||||||||||||||||| ||| ||| |||| |||||| ||||  |||||    
T  43528508 taaaagagggttaacggagacgattagtgacatggattagtaattcacatgttattttataattgattgacaataaaaacagttcatagggaattgtgtg 43528409  T
Q  238 taagtttt 245  Q
    ||||||||    
T  43528408 taagtttt 43528401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 131 - 249
Target Start/End: Complemental strand, 309923 - 309805
Alignment:
Q  131 acggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaa 230  Q
    |||||||||| ||| | |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||  |||||||||||||| |||||||||||    
T  309923 acggaggtaaaagaagtttaacggggacgattagtgacatggattagtaatccacatgttattttataattggctaacagtaagaacagttcataaggaa 309824  T
Q  231 ccgtgtgtaagttttctcc 249  Q
       ||||||||||||||||    
T  309823 ttctgtgtaagttttctcc 309805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 131 - 249
Target Start/End: Complemental strand, 13594590 - 13594472
Alignment:
Q  131 acggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaa 230  Q
    |||||||||| |||||||||| |  |||||||| | ||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||    
T  13594590 acggaggtaaaagagggttaatggagacgattagttacatggattagtaatccacatgttattttataattagctaacagtaagaacaattcataaggaa 13594491  T
Q  231 ccgtgtgtaagttttctcc 249  Q
      | |||||||||||||||    
T  13594490 ttgcgtgtaagttttctcc 13594472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 39 - 249
Target Start/End: Original strand, 44539437 - 44539645
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||| ||||||||||||||| ||| ||||||||||||||||||| ||| ||||||||| | |           ||| ||||| |||||||| || |||    
T  44539437 aacacagatgtacaacataaaatcggttgataaaaaagtaacatgattttttgttttgtgcttgttttttgt---gagtttgatttgtggttaacgaagg 44539533  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
    ||| ||| |||||||   ||| |||| ||||||| ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||  ||| |    
T  44539534 taaaagaaggttaactgtgacaattaatgacatgaattagtaatccacgtgttattttataattggctaatagtaagaacaattcataaggaattgtgcg 44539633  T
Q  238 taagttttctcc 249  Q
    ||| ||||||||    
T  44539634 taaattttctcc 44539645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 25047960 - 25048056
Alignment:
Q  153 gaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtgtaagttttctcc 249  Q
    ||||||||||| ||||||  |||||||||||| |||||||||||||||||  ||||| ||||||||||||||||||||  |||||||| ||||||||    
T  25047960 gaggacgattagtgacatacattagtaatccatgtgttattttataattggctaacaataagaacaattcataaggaattgtgtgtaaattttctcc 25048056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 2222114 - 2222037
Alignment:
Q  172 gattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtgtaagttttctcc 249  Q
    |||||||||| ||||||||||||||||||||  ||||| |||||| | |||||||||||  |||||||||||||||||    
T  2222114 gattagtaattcacgtgttattttataattgcctaacaataagaatagttcataaggaattgtgtgtaagttttctcc 2222037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 245
Target Start/End: Complemental strand, 27339659 - 27339463
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtta-cggagg 137  Q
    |||||| || ||||||| |||||||| ||||||||||||||||||||||| || |||||| |||           ||  ||||||||| |||| |||| |    
T  27339659 aacacagatttacaacaaaaaagcggctgataaaaaagtaacatgagtttttggtttgtgctagttttttgt---gaatttgatatgtagttaacggatg 27339563  T
Q  138 taagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaaccgtgtg 237  Q
    ||| |  ||||||||   |||||||| ||||||| |||||||||||||||        |||||||  ||||||||||||||||||||||||||| |||||    
T  27339562 taaaatggggttaacagagacgattagtgacatgaattagtaatccacgt--------ataattggctaacagtaagaacaattcataaggaactgtgtg 27339471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 35193325 - 35193384
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtg 98  Q
    |||||| ||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||    
T  35193325 aacacagatgtacaacataaaatcggctgataaaaaagtaacataagtttttgttttgtg 35193384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 13594679 - 13594630
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagttt 88  Q
    |||||| ||||||||| ||||| ||| |||||||||||||||||||||||    
T  13594679 aacacagatgtacaacgtaaaatcggctgataaaaaagtaacatgagttt 13594630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 370
Target Start/End: Complemental strand, 21839389 - 21839360
Alignment:
Q  341 atgttgaaaggggtaattttctttatatat 370  Q
    ||||||||||||||||||||||||||||||    
T  21839389 atgttgaaaggggtaattttctttatatat 21839360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 2222224 - 2222172
Alignment:
Q  46 atgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtg 98  Q
    ||||||||||||||| ||| | |||||||| |||||||| ||| |||||||||    
T  2222224 atgtacaacataaaatcggctcataaaaaaataacatgaatttttgttttgtg 2222172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 118 - 244
Target Start/End: Original strand, 5592680 - 5592807
Alignment:
Q  118 ttgatatgtggtta-cggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaa 216  Q
    |||||||||||||| | ||||||| || |||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5592680 ttgatatgtggttaacagaggtaaaagtgggtcaacgagaacgattagtgacatggattagtaatccacgtgttattttataattgactaacagtaagaa 5592779  T
Q  217 caattcataaggaaccgtgtgtaagttt 244  Q
     | ||||||||||||||| |||||||||    
T  5592780 tagttcataaggaaccgtatgtaagttt 5592807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 230
Target Start/End: Complemental strand, 24432391 - 24432209
Alignment:
Q  46 atgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggtt-acggaggtaagaga 144  Q
    ||||||| ||||||| ||| | ||||||||||||||||||||| |||||| || |||           ||| ||||| ||| ||| ||||| |||| |||    
T  24432391 atgtacatcataaaatcggctaataaaaaagtaacatgagtttttgttttatgctag---ttttttgtgagtttgatttgtagttaacggaagtaaaaga 24432295  T
Q  145 gggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaacaattcataaggaa 230  Q
    ||||||||| ||||||||| ||||||| ||||||| ||||| ||||||||||||||||  |||||||||||||| |||||||||||    
T  24432294 gggttaacggggacgattagtgacatgaattagtattccacatgttattttataattggctaacagtaagaacagttcataaggaa 24432209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 24409658 - 24409599
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtg 98  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||||||| | |||||||    
T  24409658 aacacagatgtagaacataaaagcggttgataaaaaagtaacatgagtttttattttgtg 24409599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 26528291 - 26528235
Alignment:
Q  146 ggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattg 202  Q
    |||||||||||||||||| | ||||||||||||||| ||  |||||||||| |||||    
T  26528291 ggttaacgaggacgattagtcacatggattagtaattcatatgttattttaaaattg 26528235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 56554 - 56426
Alignment:
Q  118 ttgatatgtggtta-cggaggtaagagagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaacagtaagaa 216  Q
    |||||||||||||| |  |||||| ||||||||||||  |||| ||| |||||||||||| |||||||||||||||||||||||||   |||||||| ||    
T  56554 ttgatatgtggttaacaaaggtaaaagagggttaacggagacgtttagtgacatggattaataatccacgtgttattttataattggcgaacagtaaaaa 56455  T
Q  217 caattcataaggaaccgtgtgtaagtttt 245  Q
    || |||||||||||| |||||||||||||    
T  56454 cagttcataaggaactgtgtgtaagtttt 56426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 56661 - 56614
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagt 86  Q
    |||||| ||||||| |||||||| || |||||||||||||||||||||    
T  56661 aacacagatgtacagcataaaagtggctgataaaaaagtaacatgagt 56614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0990 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 1117 - 997
Alignment:
Q  45 aatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtgttagnnnnnnnnnnngagattgatatgtggttacggaggtaagaga 144  Q
    |||||||||||||||||||| | ||||||||||||||| ||||| ||||||||| ||            ||| ||||||||||||||||||||||| |||    
T  1117 aatgtacaacataaaagcggctaataaaaaagtaacataagtttttgttttgtgcta---tttttttgtgagtttgatatgtggttacggaggtaaaaga 1021  T
Q  145 gggttaacgaggacgattattgac 168  Q
    |||| |||| ||||||||| ||||    
T  1020 gggtcaacggggacgattaatgac 997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 17244 - 17309
Alignment:
Q  142 agagggttaacgaggacgattattgacatggattagtaatccacgtgttattttataattgattaa 207  Q
    ||||||||||||  ||| |||| |||||||||||||||||||| || |||||||||||||| ||||    
T  17244 agagggttaacggagacaattagtgacatggattagtaatccatgtattattttataattggttaa 17309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 17143 - 17202
Alignment:
Q  39 aacacaaatgtacaacataaaagcggatgataaaaaagtaacatgagtttctgttttgtg 98  Q
    |||||| ||||||||||||||| |||   ||||||||||||||||| ||| |||||||||    
T  17143 aacacatatgtacaacataaaatcggcatataaaaaagtaacatgaatttttgttttgtg 17202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University