View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6517_high_7 (Length: 461)
Name: NF6517_high_7
Description: NF6517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6517_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Original strand, 5174206 - 5174635
Alignment:
| Q |
19 |
aatgtagcattgcattacaggttcatattcatttttcagaacagcccataaccaacgctcgcccacaaatatcaatannnnnnnnngggaaactcagatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5174206 |
aatgtagcattgcattacaggttcatattcatttttcagaacagcccataaccaacgctcgcccacaaatatcaatattttt----gggaaactcagatg |
5174301 |
T |
|
| Q |
119 |
caacttagtttttgaataaactatataatactaatttgttatgcttggaatgtttatactttagattatcatatgtctctaacatagtaattataaaaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5174302 |
caacttagtttttgaataaactatataatactaatttgttatgcttggactgtttatactttagattatcatatgtctctaacatagttattataaaaat |
5174401 |
T |
|
| Q |
219 |
tcatacgtttgtccaattatacaagttacaaaattttgatcattttttcttnnnnnnngaag---atcattttaataaaaataacaaattttaattttac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5174402 |
tcatacgtttgtccaattatacaagttacaaaattttgatcattttttcttaaaaaaagaagaagatcattttaataaaaataacaaattttaattttac |
5174501 |
T |
|
| Q |
316 |
gtattagtgaattttaaataagggtaagaatagaattagaaagctataattgactccatacagctcattttccaaacaatgtaatagactttctacttca |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5174502 |
gtattagtgaattttaaataagggtaagaatagaattagaaggctataattgactccatacagctcattttccaaacaatgtaatagactttctacatca |
5174601 |
T |
|
| Q |
416 |
ttctattatgttccattctattatgattcattct |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5174602 |
ttctattatgttccattctattatgattcattct |
5174635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University