View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6517_low_1 (Length: 583)

Name: NF6517_low_1
Description: NF6517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6517_low_1
NF6517_low_1
[»] chr3 (5 HSPs)
chr3 (5-366)||(2112646-2113001)
chr3 (433-568)||(2112491-2112626)
chr3 (510-561)||(25070682-25070733)
chr3 (510-561)||(26903241-26903292)
chr3 (510-561)||(36617748-36617799)
[»] chr4 (1 HSPs)
chr4 (510-562)||(1112090-1112142)
[»] chr8 (2 HSPs)
chr8 (510-566)||(29841126-29841182)
chr8 (510-561)||(45486166-45486217)
[»] chr7 (2 HSPs)
chr7 (510-561)||(43265905-43265956)
chr7 (510-561)||(39780969-39781020)
[»] chr2 (2 HSPs)
chr2 (510-561)||(34878603-34878654)
chr2 (510-561)||(4075533-4075584)
[»] chr6 (2 HSPs)
chr6 (510-561)||(18817003-18817054)
chr6 (510-561)||(24901772-24901823)
[»] chr1 (1 HSPs)
chr1 (510-561)||(1016976-1017027)
[»] scaffold0684 (1 HSPs)
scaffold0684 (495-561)||(4181-4247)
[»] scaffold0163 (1 HSPs)
scaffold0163 (495-561)||(3871-3937)
[»] scaffold0311 (1 HSPs)
scaffold0311 (510-562)||(806-858)
[»] chr5 (1 HSPs)
chr5 (511-555)||(7607231-7607275)


Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 5 - 366
Target Start/End: Complemental strand, 2113001 - 2112646
Alignment:
Q  5 tggacatcatcatgcacaaaccttggctgctcaagagacattggctaggttggtgagaatgaggagtaagatatgaacatgaacatgaacatgcatgttt 104  Q
    ||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||      |||||||    
T  2113001 tggacataaccatgcacaaaccttggctgctcaagagacattggcaaggttggtgagaatgaggagtaagatatgaacatgaacatg------catgttt 2112908  T
Q  105 tgttacaccatttgtcttgttcatttacatttgaacttcatacatgacaccacttgtagtggagatgtaatgttactatggtaatgtagattgaataatg 204  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2112907 tgttacaccatttgtcttgttcatttacatttaaacttcatacatgacaccacttgtagtggagatgtaatgttactatggtaatgtagattgaataatg 2112808  T
Q  205 atcaaatttcgttcttgaaaccgtcttgacttggtctctgaatttatgtatagcttcaaacctaaacttgcttaatctgaaacttttaaacaataatttt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2112807 atcaaatttcgttcttgaaaccgtcttgacttggtctctgaatttatgtatagcttcaaacctaaacttgcttaatctgaaacttttaaacaataatttt 2112708  T
Q  305 tcagggaaactaccacaaagttagtaaagtgagttcagtgaatcgtttaaaacaagagttca 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2112707 tcagggaaactaccacaaagttagtaaagtgagttcagtgaatcgtttaaaacaagagttca 2112646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 433 - 568
Target Start/End: Complemental strand, 2112626 - 2112491
Alignment:
Q  433 gacgaagtaacaactaagtttataaagaaaataatttctcactcatttgttgaaaataatttattactaactattacaagaacatatgtttctataaaag 532  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2112626 gacgaagtaacaactaagtttataaagagaataatttctcactcatttgttgaaaataatttattactaactattacaagaacatatgtttctataaaag 2112527  T
Q  533 ttacaagacaatcatttaaccattgatcatttatct 568  Q
    ||  ||||||||||||||||||||||||||||||||    
T  2112526 ttttaagacaatcatttaaccattgatcatttatct 2112491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 561
Target Start/End: Complemental strand, 25070733 - 25070682
Alignment:
Q  510 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 561  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  25070733 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 25070682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 561
Target Start/End: Original strand, 26903241 - 26903292
Alignment:
Q  510 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 561  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  26903241 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 26903292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 561
Target Start/End: Complemental strand, 36617799 - 36617748
Alignment:
Q  510 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 561  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  36617799 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 36617748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 510 - 562
Target Start/End: Original strand, 1112090 - 1112142
Alignment:
Q  510 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatcat 562  Q
    |||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  1112090 aagaacatgtatttctatataagttacaagacaatcatttaaccattgatcat 1112142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 510 - 566
Target Start/End: Complemental strand, 29841182 - 29841126
Alignment:
Q  510 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatcatttat 566  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||| | |||||||||    
T  29841182 aagaacatatctttctatataagttacaagacactcatttaaccactaatcatttat 29841126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 561
Target Start/End: Complemental strand, 45486217 - 45486166
Alignment:
Q  510 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 561  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  45486217 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 45486166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 510 - 561
Target Start/End: Complemental strand, 43265956 - 43265905
Alignment:
Q  510 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 561  Q
    |||||||| | ||||||||||||||||||| | |||||||||||||||||||    
T  43265956 aagaacatctctttctataaaagttacaagccgatcatttaaccattgatca 43265905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 561
Target Start/End: Complemental strand, 39781020 - 39780969
Alignment:
Q  510 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 561  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  39781020 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 39780969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 510 - 561
Target Start/End: Complemental strand, 34878654 - 34878603
Alignment:
Q  510 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 561  Q
    |||||||||| |||||||| |||||||||||| |||||||||||||| ||||    
T  34878654 aagaacatatatttctatataagttacaagacgatcatttaaccattaatca 34878603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 561
Target Start/End: Original strand, 4075533 - 4075584
Alignment:
Q  510 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 561  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  4075533 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 4075584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 561
Target Start/End: Original strand, 18817003 - 18817054
Alignment:
Q  510 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 561  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  18817003 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 18817054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 561
Target Start/End: Original strand, 24901772 - 24901823
Alignment:
Q  510 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 561  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  24901772 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 24901823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 561
Target Start/End: Complemental strand, 1017027 - 1016976
Alignment:
Q  510 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 561  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  1017027 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 1016976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 561
Target Start/End: Original strand, 4181 - 4247
Alignment:
Q  495 attactaactattacaagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 561  Q
    |||||||| ||||  |||||||| | |||||||| | |||||||||||||||||| | |||||||||    
T  4181 attactaattattttaagaacatctctttctatatatgttacaagacaatcatttgagcattgatca 4247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 561
Target Start/End: Complemental strand, 3937 - 3871
Alignment:
Q  495 attactaactattacaagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 561  Q
    |||||||| ||||  |||||||| | |||||||| | |||||||||||||||||| | |||||||||    
T  3937 attactaattattttaagaacatctctttctatatatgttacaagacaatcatttgagcattgatca 3871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 562
Target Start/End: Complemental strand, 858 - 806
Alignment:
Q  510 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatcat 562  Q
    |||||||||| |||||||| |||||||||||   ||||||| |||||||||||    
T  858 aagaacatatctttctatataagttacaagatggtcatttagccattgatcat 806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 555
Target Start/End: Complemental strand, 7607275 - 7607231
Alignment:
Q  511 agaacatatgtttctataaaagttacaagacaatcatttaaccat 555  Q
    ||||||| | |||||||| ||||||||||||| ||||||||||||    
T  7607275 agaacatctctttctatataagttacaagacactcatttaaccat 7607231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University