View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6517_low_10 (Length: 356)
Name: NF6517_low_10
Description: NF6517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6517_low_10 |
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| [»] scaffold0256 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 16571825 - 16571484
Alignment:
| Q |
1 |
tcatttctatgaaaaatcaaacaggaatttctattaaaactgatcaatactatttctatgaaaaatcaaagatgaatttctttgaacagtgacattggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
16571825 |
tcatttctatgaaaaatcaaacaggaatttctattaaaactgatcaatactatttctatgaaaaatcaaacaggaatttctttgaacagtgacattggat |
16571726 |
T |
|
| Q |
101 |
ctattaaaattatatattactgaacatcatatattgtaagcacatacattttaaaaaagataggatttagtacctgttttggagtcttctcatgataacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16571725 |
ctattaaaattatatattactgaacatcatatattgtaagcacatacattttaaaaaagataggatttagtacctgttttggagtcttttcatgataacg |
16571626 |
T |
|
| Q |
201 |
actccgcacaactccttgtgcgagcaattctttcaaccttctaccagaataaagttcagacagacagtcatgtgcttcagaaaccagcccagcacgaata |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16571625 |
actccgcgcaactccttgtgcgagcaattctttcaaccttccagcagaataaagttcag----acagtcatgtgcttcagaaaccagcccagcacgaata |
16571530 |
T |
|
| Q |
301 |
gcacataggcctaactgtgacatagccctgttaaaatgtatctgtg |
346 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16571529 |
gcacataggcctaactgtgacatagccctgttaaaatgtatctgtg |
16571484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 51 - 346
Target Start/End: Complemental strand, 16873779 - 16873484
Alignment:
| Q |
51 |
tatttctatgaaaaatcaaagatgaatttctttgaacagtgacattggatctattaaaattatatattactgaacatcatatattgtaagcacatacatt |
150 |
Q |
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||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16873779 |
tatttctatgaaaaagcaaacaggaacttctttgaacagtgacattggatctattaaaattatatattactgaacatcatatattgtaagcacatacatt |
16873680 |
T |
|
| Q |
151 |
ttaaaaaagataggatttagtacctgttttggagtcttctcatgataacgactccgcacaactccttgtgcgagcaattctttcaaccttctaccagaat |
250 |
Q |
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||||||||||| |||||||||||||||| || |||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||| |
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| T |
16873679 |
ttaaaaaagatgggatttagtacctgttctgaagtctttttatgataacgactccgcgcaactccttgtgcaagcaattctttcaaccttccaccgaaat |
16873580 |
T |
|
| Q |
251 |
aaagttcagacagacagtcatgtgcttcagaaaccagcccagcacgaatagcacataggcctaactgtgacatagccctgttaaaatgtatctgtg |
346 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16873579 |
aaagttcagacagacagtcatgtgcttcagaaaccagcccagcaggaaaagcacataggcctaactgtgacatagccctgttaaaacgtatctgtg |
16873484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 52 - 346
Target Start/End: Original strand, 11940 - 12235
Alignment:
| Q |
52 |
atttctatgaaaaatcaaagatgaatttctttgaac-agtgacattggatctattaaaattatatattactgaacatcatatattgtaagcacatacatt |
150 |
Q |
| |
|
||||||||||||||||||| | |||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11940 |
atttctatgaaaaatcaaacaggaatatctttaaaccagtgacatttgatctattaaaattatatattactgaacaccatatattgtaagcacatacatt |
12039 |
T |
|
| Q |
151 |
ttaaaaaagataggatttagtacctgttttggagtcttctcatgataacgactccgcacaactccttgtgcgagcaattctttcaaccttctaccagaat |
250 |
Q |
| |
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||||||||||| |||||||||||||||| | ||||||| |||||||||||| || | ||||||||||| |||||||||||||||||||| ||| |||| |
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| T |
12040 |
ttaaaaaagatgggatttagtacctgttctagagtcttttcatgataacgattctgtgcaactccttgtatgagcaattctttcaaccttccaccggaat |
12139 |
T |
|
| Q |
251 |
aaagttcagacagacagtcatgtgcttcagaaaccagcccagcacgaatagcacataggcctaactgtgacatagccctgttaaaatgtatctgtg |
346 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
12140 |
aaagttcagactgacagtcatgtgcttcagaaaccagcccagcacgaaaagcacataggcctaactatgacatagccctgttaaaacgtatctgtg |
12235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 14399 - 14465
Alignment:
| Q |
280 |
gaaaccagcccagcacgaatagcacataggcctaactgtgacatagccctgttaaaatgtatctgtg |
346 |
Q |
| |
|
||||||| |||| |||||| |||||||| ||||| |||||||||||||||||| |||||||||||| |
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| T |
14399 |
gaaaccatcccatcacgaaaagcacatacacctaattgtgacatagccctgttagaatgtatctgtg |
14465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 163 - 346
Target Start/End: Complemental strand, 32791763 - 32791581
Alignment:
| Q |
163 |
ggatttagtacctgttttggagtcttctcatgataacgactccgcacaactccttgtgcgagcaattctttcaaccttctaccagaataaagttcagaca |
262 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||| | |||||||||||||| |
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| T |
32791763 |
ggatttagtacctgctttggagtcttttcatgataatgactccgtgcaactccttgtgcgagcaattctttcacccttccaccgggataaagttcagaca |
32791664 |
T |
|
| Q |
263 |
gacagtcatgtgcttcagaaaccagcccagcacgaatagcacataggcctaactgtgacatagccctgttaaaatgtatctgtg |
346 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||| |||||| |||||||||||||||||||| ||||||||| |
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| T |
32791663 |
gacagtcatgtgcttcagaaatcagcccagcacgaaaagcacatagacctaac-gtgacatagccctgttaaaaagtatctgtg |
32791581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 163 - 337
Target Start/End: Complemental strand, 21628022 - 21627848
Alignment:
| Q |
163 |
ggatttagtacctgttttggagtcttctcatgataacgactccgcacaactccttgtgcgagcaattctttcaaccttctaccagaataaagttcagaca |
262 |
Q |
| |
|
||||||| |||||||| |||||| || |||||||||| |||||| ||||||||||||||||||||||| ||| ||||| ||| | |||||||||||||| |
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|
| T |
21628022 |
ggatttaatacctgttctggagttttttcatgataacaactccgtgcaactccttgtgcgagcaattctctcacccttccaccgggataaagttcagaca |
21627923 |
T |
|
| Q |
263 |
gacagtcatgtgcttcagaaaccagcccagcacgaatagcacataggcctaactgtgacatagccctgttaaaat |
337 |
Q |
| |
|
|||| |||||||||||||||| ||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
21627922 |
gacattcatgtgcttcagaaatcagtccagcacgaaaagcacatagacctaactgtgacatagccctgttaaaat |
21627848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 153 - 346
Target Start/End: Original strand, 235643 - 235836
Alignment:
| Q |
153 |
aaaaaagataggatttagtacctgttttggagtcttctcatgataacgactccgcacaactccttgtgcgagcaattctttcaaccttctaccagaataa |
252 |
Q |
| |
|
||||||| | |||||||||||||||| ||||||||| ||||||||||| ||| | ||||||||| || ||||||||||||| | | |||||||||| |
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|
| T |
235643 |
aaaaaagctgggatttagtacctgttctggagtcttttcatgataacggctctgtgaaactccttgcgcaagcaattctttcacacgcccaccagaataa |
235742 |
T |
|
| Q |
253 |
agttcagacagacagtcatgtgcttcagaaaccagcccagcacgaatagcacataggcctaactgtgacatagccctgttaaaatgtatctgtg |
346 |
Q |
| |
|
||||| |||| |||| |||| |||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||||||||| |||| |||| |
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|
| T |
235743 |
agttccgacaaacagccatgcgcttcagaaaccagcccaacccgaaaagcacatagacctaactgtgacatagccctgttaaaaagtatttgtg |
235836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 32791926 - 32791833
Alignment:
| Q |
52 |
atttctatgaaaaatcaaagatgaatttctttgaa-cagtgacattggatctattaaaattatatattactgaacatcatatattgtaagcacata |
146 |
Q |
| |
|
|||||||||||||||| || || ||||||||| || ||||||| | |||||||||| |||||||| || | |||||||||||||||| ||||||| |
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|
| T |
32791926 |
atttctatgaaaaatctaacataaatttctttaaagcagtgacttcggatctattacaattatat--tattcaacatcatatattgtatgcacata |
32791833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 163 - 346
Target Start/End: Original strand, 48300076 - 48300259
Alignment:
| Q |
163 |
ggatttagtacctgttttggagtcttctcatgataacgactccgcacaactccttgtgcgagcaattctttcaaccttctaccagaataaagttcagaca |
262 |
Q |
| |
|
||||| |||||||||| ||||||||| ||||||||||| || | |||||||||||| |||| |||||||| || || |||||||||||||||||||| |
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|
| T |
48300076 |
ggattgagtacctgttctggagtcttttcatgataacggttctgtgaaactccttgtgcaagcagttctttcacccgtccaccagaataaagttcagaca |
48300175 |
T |
|
| Q |
263 |
gacagtcatgtgcttcagaaaccagcccagcacgaatagcacataggcctaactgtgacatagccctgttaaaatgtatctgtg |
346 |
Q |
| |
|
|||| ||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48300176 |
aacagccatgtgcttcagaaaccaggccaacacgaaaagcacatagacctaactgtgacatagccctgttaaagagtatctgtg |
48300259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 153 - 346
Target Start/End: Complemental strand, 7390162 - 7389969
Alignment:
| Q |
153 |
aaaaaagataggatttagtacctgttttggagtcttctcatgataacgactccgcacaactccttgtgcgagcaattctttcaaccttctaccagaataa |
252 |
Q |
| |
|
||||||| | |||||||||||||||| ||| ||||| ||||||||||| ||| | ||||||||| || |||||||| |||| || || |||||||||| |
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|
| T |
7390162 |
aaaaaagctgggatttagtacctgttctggggtcttttcatgataacggctctgtgaaactccttgcgcaagcaattccttcacccgtccaccagaataa |
7390063 |
T |
|
| Q |
253 |
agttcagacagacagtcatgtgcttcagaaaccagcccagcacgaatagcacataggcctaactgtgacatagccctgttaaaatgtatctgtg |
346 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||||||||||| |||| |||||| || ||||||||||||||||||||||||||| |||| |||| |
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|
| T |
7390062 |
agttcagacaaacagccatgcgcttcagaaaccagcccagcccgaaaagcacaaagacctaactgtgacatagccctgttaaaaagtatttgtg |
7389969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 7390284 - 7390206
Alignment:
| Q |
50 |
ctatttctatgaaaaatcaaagatgaatttcttt-gaacagtgacattggatctattaaaattatatattactgaacatca |
129 |
Q |
| |
|
||||||||||||||||||||| | |||||||| || ||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
7390284 |
ctatttctatgaaaaatcaaacagagatttctttagagcagtgacattggatctattaaaatt--atattactgaacatca |
7390206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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